YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109072892
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGAAGVLLL LLLSGGLRGG QAQRPQLQRR PQAHQQRGLF PAVLNLASNA LITTNATCGE  60
   61 KGPEMYCKLV EHVPGQPVRN PQCRICNQNS SNPNQRHPIT NAIDGKNTWW QSPSIKNGIE 120
  121 YHYVTITLDL QQVFQIAYVI VKAANSPRPG NWILERSLDD VEYKPWQYHA VTDTECLTLY 180
  181 NIYPRTGPPS YAKDDEVICT SFYSKIHPLE NGEIHISLIN GRPSADDPSP ELLEFTSARY 240
  241 IRLRFQRIRT LNADLMMFAH KDPREIDPIV TRRYYYSVKD ISVGGMCICY GHARACPLDP 300
  301 ATNKSRCECE HNTCGDSCDQ CCPGFHQKPW RAGTFLTKTE CEACNCHGKA EECYYDENVA 360
  361 RRSLSLNIHG KYIGGGVCIN CTQNTAGINC ETCIDGFFRP KGVSPNYPRP CQPCHCNPIG 420
  421 SLNEVCVKDE KHAQRGLAPG SCHCKTGFGG VSCDRCARGY TGYPDCKACN CSGLGSKNED 480
  481 PCFGPCNCKE NVEGGDCSRC KSGFFNLQED NWKGCDECFC SGVSDRCQSS YWTYGKIQDM 540
  541 SGWYLTDLSG HIRVAPQQDD SDSPQQISIS NAEARQALPH SYYWSAPASY LGNKLPAVGG 600
  601 QLTFTISYDL EEEEEDTEHV LQFMIILEGN DLRISTAQDE VYLHPSEEHV NVLLLKEESF 660
  661 TIHGTHFPVS RKEFMTVLAN LKRVLLQITY SFGMDAIFRL SSVNLESAVS YPTDGSVAAA 720
  721 VEVCQCPPGY TGSSCESCWP RHRRVNGTIF GGICEPCQCF GHAESCDDVT GECLNCKDHT 780
  781 DGPYCDKCLP GFYGDPTKGT SEDCQPCACP LNIPSNNFSP TCHLDRSLGL ICDGCPVGYT 840
  841 GPRCERCAEG YFGQPSVPGG SCQPCQCNDN LDFSIPGSCD SLSGSCLICK PGTTGRYCEL 900
  901 CADGYFGDAV DARNCQPCRC NANGSFSEIC HSQTGQCECR ANVQGQRCDK CKPGTFGLQS 960
  961 ARGCVPCNCN SFGSKSFDCE ESGQCWCQPG VTGKKCDRCA HGYFSFQEGG CTACECSHLG1020
 1021 NNCDPKTGQC ICPPNTIGEK CSKCAPNTWG HSITTGCKAC NCSTVGSLDF QCNVNTGQCN1080
 1081 CHPKFSGAKC TECSRGHWNY PRCNLCDCFL PGTDATTCDS ETKKCSCSDQ TGQCTCKVNV1140
 1141 EGIHCDRCQP GKFGLDAKNP LGCSSCYCFG TTTQCSEAKG LIRTWVTLKA EQTILPLVDE1200
 1201 ALQHTTTKGI VFQHPEIVAH MDLMREDLHW EPFYWKLPEQ FEGKKLMAYG GKLKYAIYFE1260
 1261 AREETGFSTY NPQVIIRGGT PTHARIIVRH MAAPLIGQLT RHEIEMTEKE WKYYGDDPRV1320
 1321 HRTVTREDFL DILYDIHYIL IKATYGNFMR QSRISEISME VAEQGRRTAV TPPAHLIEKC1380
 1381 DCPLGYSGLS CEACLPGFYR LRSQPGGRTP GPTLGTCVPC QCNGHSSLCD PETSICQNCQ1440
 1441 HHTAGDFCER CALGYYGIVK GLPNDCQQCA CPLISSSNNF SPSCVTEGLD DYRCTACPRG1500
 1501 YEGQYCERCA PGYTGSPSSP GGSCQECECD PYGSLPVPCD PVTGICTCRP GATGRKCDGC1560
 1561 KHWHAREGWE CVFCGDECTG LLLGDLARLE QMVMSINLTG PLPAPYKMLY GLENMTQELK1620
 1621 HLLSPQRAPE RLIQLAEGNL NTLVTEMNEL LTRATKVTAD GEQTGQDAER TNTRAKSLGE1680
 1681 FIKELARDAE AVNEKAIKLN ETLGTRDEAF ERNLEGLQKE IDQMIKELRR KNLETQKEIA1740
 1741 EDELVAAEGL LKKVKKLFGE SRGKNEEMEK DLREKLADYK NKVDDAWDLL REATNKIREA1800
 1801 NRLFAVNQKN MTALEKKKEA VESGKRQIEN TLKEGNDILD EANRLADEIN SIIDYVEDIQ1860
 1861 TKLPPMSEEL NNKIDDLSQE IKDRKLAEKV SQAESHAAQL NDSSAVLDGI LDEAKNISFN1920
 1921 ATAAFKAYSN IKDYIDEAEK VAKEAKDLAH EATKLATGPR GLLKEDAKGS LQKSFRILNE1980
 1981 AKKLANDVKE NEDHLNGLKT RIENADARNG DLLRALNDTL GKLSAIPNDT AAKLQAVKDK2040
 2041 ARQANDTAKD VLAQIKELHQ NLDGLKKNYD KLADSVAKTN AVVKDPSKNK IIADADATVK2100
 2101 NLEQEADRLI DKLKPIKELE DNLKKNISEI KELINQARKQ ANSIKVSVSS GGDCIRTYKP2160
 2161 EIKKGSYNNI VVNVKTAVAD NLLFYLGSAK FIDFLAIEMR KGKVSFLWDV GSGVGRVEYP2220
 2221 DLTIDDSYWY RIMASRTGRN GTISVRALDG PKASIVPSTY HSTSPPGYTI LDVDANAMLF2280
 2281 VGGLTGKLKK ADAVRVITFT GCMGETYFDN KPIGLWNFRE KEGDCKGCTV SPQVEDSEGT2340
 2341 IQFDGEGYAL VSRPIRWYPN ISTVMFKFRT FSSSALLMYL ATRDLRDFMS VELTDGHIKV2400
 2401 SYDLGSGMAS VVSNQNHNDG KWKSFTLSRI QKQANISIVD IDTNQEENIA TSSSGNNFGL2460
 2461 DLKADDKIYF GGLPTLRNLS MKARPEVNLK KYSGCLKDIE ISRTPYNILS SPDYVGVTKG2520
 2521 CSLENVYTVS FPKPGFVELS PVPIDVGTEI NLSFSTKNES GIILLGSGGT PAPPRRKRRQ2580
 2581 TGQAYYAILL NRGRLEVHLS TGARTMRKIV VRPEPNLFHD GREHSVHVER TRGIFTVQVD2640
 2641 ENRRYMQNLT VEQPLEVKKL FVGGAPPEFQ PSPLRNIPPF EGCVWNLVIN SVPMDFARPV2700
 2701 SFKNADIGRC VHQKLHEDED GAAPAETVIQ PEPVPTPAFP TPTAVLTHGP CAAESEPALL2760
 2761 MGSKQFGLSR NSHIAIAFDD TKVKNRLTIE LEYDLGSGDT NTLIPTKIND GQWHKIKIMR2820
 2821 SKQEGILYVD GASNRTISPR KADILDVVGM LYVGGLPINY TTRRIGPVTY SIDGCIRNLH2880
 2881 MAEAPADLEE PTSSFHIGTC FANAQRGTYF DGTGFAKAVG GFKVGLDLLV EFEFRTTRTT2940
 2941 GVLLGISSQK MDGMGIEMID EKLMFHVDNG AGRFTAVYDA GVPGHLCDGQ WHKVTANKIK3000
 3001 HRIELTVDGN QVEAQSLNPA STSADTNDPV FVGGFPDDLK QFGLTTSIPF RGCVRSLKLT3060
 3061 KGTGKPLEVN FAKALELRGV QPVSCPAN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle