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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109071047
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVDPFDGRL EQFTTVNMSG EGIQADVAPY CLGLANTGVK DRHWDQLLST HTQALDTPLS  60
   61 IQTPEPSSSP ARFLSPHWLL KSLHPLALLE ERLQPGELDS PPPSCGYVNV AFKVIEAKEE 120
  121 KKSLSLIQQI FVKLPYGSPH LPLPAPAGKA RAPEGGSNLF QQERSEGAHT LAPLPLGPAP 180
  181 SSAGSRLERN ALLPFLISAW GAWAELGSWI PPRHQTPGSS GSSALGWERE EPPQPGAAPR 240
  241 QQLARQPPPP LPLSLGLSLV LFGAEGRHWS ITVTITTTTI IIVVIIIIII IVIIIIYLLS 300
  301 RSNGADDTER GPWNLTYTAA VSWGQNCPES IQAGQTLPGS LKGSCHGQQS GLLTQRATRY 360
  361 AGSPVDGEPQ DLTSPLGFIH FTVCASQLSA PISKRLNALP EIQWPPASPF MGLEMGLWLG 420
  421 QGLKDESNVG AVIGDSHTDM GAQQQRRNKL GVLVTSLQLI FGGVEATSPQ IYFQLASGED 480
  481 ERGHLQIEFL SGKCSHSVTV PESETQDGSR SWALWRIKRR WAAPVRTAAV PACSGPAPPP 540
  541 APGNSLILQP QPRRTVSRSA LSNFRVVIND YSAEMVTGVW QDWVGAIVPA PTPSLGPARS 600
  601 GFPPAGGGLT AAGRARHVRR QRRRQLQRCS PGRPARLQQG LPVPLDRRDC PPGSGARGLP 660
  661 TALRQGGPSP LLPLRASPRH PCQDRESLWF RRRCWSSRKR VRSAAGRAAG SEAAFGSCSS 720
  721 AGRHWGLPRR RARRGRCALP PGSWAPLAAG LSPRLALRCL RSLPDSLSDW SLESVSGGEG 780
  781 CVAEPGSPGA PRSRPRCLPA GGRCCLAQGL SDQTMETLLG GLLAFGMAFA VVDACPKYCV 840
  841 CQNLSESLGT LCPSKGLLFV PPDIDRRTVE LRLGGNFIIH ISRQDFANMT GLVDLTLSRN 900
  901 TISHIQPFSF LDLESLRSLH LDSNRLPSLG EDTLRGLVNL QHLIVNNNQL GGIADEAFED 960
  961 FLLTLEDLDL SYNNLHGLPW DSVRRMVNLH QLSLDHNLLD HIAEGTFADL QKLARLDLTS1020
 1021 NRLQKLPPDP IFARSQASAL TATPFAPPLS FSFGGNPLHC NCELLWLRRL ERDDDLETCG1080
 1081 SPGGLKGRYF WHVREEEFVC EPPLITQHTH KLLVLEGQAA TLKCKAIGDP SPLIHWVAPD1140
 1141 DRLVGNSSRT AVYDNGTLDI FITTSQDSGA FTCIAANAAG EATATVEVSI VQLPHLSNST1200
 1201 SRTAPPKSRL SDITGSSKTS RGGGGSGGGE PPKSPPERAV LVSEVTTTSA LVKWSVSKSA1260
 1261 PRVKMYQLQY NCSDDEVLIY RMIPASNKAF VVNNLVSGTG YDLCVLAMWD DTATTLTATN1320
 1321 IVGCAQFFTK ADYPQCQSMH SQILGGTMIL VIGGIIVATL LVFIVILMVR YKVCNHEAPS1380
 1381 KMAAAVSNVY SQTNGAQPPP PSSTPAGAPP QGPPKVVVRN ELLDFTASLA RASDSSSSSS1440
 1441 LGSGEAAGLG RAPWRLPPSA PRPKPSLDRL MGAFASLDLK SQRKEELLDS RTPAGRGAGT1500
 1501 SARGHHSDRE PLLGPPAARA RSLLPLPLEG KAKRSHSFDM GPFEESDLVG ARGTFGSSEW1560
 1561 VMESTV

YRC Informatics Platform - Version 3.0
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