YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109070167
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.32
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKICERGKLQ LLVEKGFFFL ALRSQFSPGP LLLSCHPDPG LPSLCAAVLL HLHPRLPVSA  60
   61 PAPLPLARVP SSRPQLPVVL PAGPPVVTSA RRRVRVHQRT SLSPTSQPRA SPPPAPPRCG 120
  121 RSRAGLGSGA APGARMLLLL LLLAPLFLRP PGAGGAQTPN ATSEGASFFD DLGPSFAPLP 180
  181 FPCISSFLVL ITIPSVSHII PVVGPKVRKC LANGSWTDMD TPSRCVRICS KSYLTLENGK 240
  241 VFLTGGDLPA LDGARVDFRC DPDFHLVGSS RSICSQGQWS TPKPHCQVPP HPSSERRAVY 300
  301 IGALFPMSGG WPGGQACQPA VEMALEDVNS RRDILPDYEL KLIHHDSKCD PGQATKYLYE 360
  361 LLYNDPIKII LMPGCSSVST LVAEAARMWN LIVLSYGSSS PALSNRQRFP TFFRTHPSAT 420
  421 LHNPTRVKLF EKWGWKKIAT IQQTTEVFTS TLDDLEERVK EAGIEITFRQ SFFSDPAVPV 480
  481 KNLKRQDARI IVGLFYETEA RKVFCEVYKE RLFGKKYVWF LIGWYADNWF KIYDPSINCT 540
  541 VDEMTEAVEG HITTEIVMLN PANTRSISNM TSQEFVEKLT KRLKRHPEET GGFQEAPLAY 600
  601 DAIWALALAL NKTSGGGGRS GVRLEDFNYN NQTITDQIYR AMNSSSFEGV SGHVVFDASG 660
  661 SRMAWTLIEQ LQGGSYKKIG YYDSTKDDLS WSKTDKWIGG SPPADQTLVI KTFRFLSQKL 720
  721 FISVSVLSSL GIVLAVVCLS FNIYNSHVRY IQNSQPNLNN LTAVGCSLAL AAVFPLGLDG 780
  781 YHIGRNQFPF VCQARLWLLG LGFSLGYGSM FTKIWWVHTV FTKKEEKKEW RKTLEPWKLY 840
  841 ATVGLLVGMD VLTLAIWQIV DPLHRTIETF AKEEPKEDID VSILPQLEHC SSRKMNTWLG 900
  901 IFYGYKGLLL LLGIFLAYET KSVSTEKIND HRAVGMAIYN VAVLCLITAP VTMILSSQQD 960
  961 AAFAFASLAI VFSSYITLVV LFVPKMRRLI TRGEWQSEAQ DTMKTGSSTN NNEEEKSRLL1020
 1021 EKENRELEKI IAEKEERVSE LRHQLQSRQQ LRSRRHPPTP PDPSGGLPRG PPEPPDRLSC1080
 1081 DGSRVHLLYK 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle