YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109069682
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDCGSVGGQR TQRLPGHRRL LFLPAGLSGR PGGSETSARR CLSALCDGLG ALRPRAPATR  60
   61 GCVSRASPLL LLLLVPSPRL AAAAPRRQLG DWERSRLGYA APPAGRSGAW RCPPGLSPGV 120
  121 AGAAGALPQC KGPAPALVSC RRELSLSAGH LQLERRRRDF TSSGSRRLYF DTHALVCLLE 180
  181 DNGFATQQAE IIVSALVKIL EANMDVVYKD MVTKMQQEIT FQQIMSQIAN VKKDMIILEK 240
  241 SEFSALRAEN EKIKLELHQL KQQVMDEMIK VRTDTKLDFN LEKSRVKELV RLNNSKLLIL 300
  301 KSWDISLHAQ QDRALTQTDR KIETEVAGLK TMLESHKLDN IKYLAGSIFT CLTVALGFYR 360
  361 LWI

Type	Start	End	Confidence
Non-Cytoplasmic	1	340	0.63
Transmembrane Helix	341	362	0.70
Cytoplasmic	363	363	0.42