YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109067976
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSGKRQNLK KKPAETTGLT EVWNTVAVPS YTNSSTFLRQ SQRWKNCLPK ELLGAKGQCE  60
   61 PQREKTRDST TRTRISHNSA RLLSSFTPNK KRLILFLPAC STSTFSLIIF HHTGFYSDWK 120
  121 PTLPQLLSRT PPSGSVLLFS ASRSLCLTRL PEHGPELQRK HTAHAHSLVR AALLLFGWLV 180
  181 RPNFRVKGLR SSNSHDICGG PQTRAAAEFW RALSVLLVAG TTALSGTAGP SSMTSALENY 240
  241 INRTVAVITS DGRMIVGTLK GFDQTINLIL DESHERVFSS SQGVEQVVLG LYIVRGDNVA 300
  301 VIGEIDEETD SALDLGNIRA EPLNSVAH

Type	Start	End	Confidence
Cytoplasmic	1	92	0.98
Transmembrane Helix	93	114	0.92
Non-Cytoplasmic	115	161	0.78
Transmembrane Helix	162	180	0.77
Cytoplasmic	181	208	0.69
Transmembrane Helix	209	229	0.63
Non-Cytoplasmic	230	328	0.70