YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109065378
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKNRLAEEA TLAASTLRSN WQRQHCGATR QTRSCPPPFP LASVGEDAQK EARGRGERRG  60
   61 YPPPGSVPTH AQTLWGHSET REDAHSREQG SRRGSRLQEA RPRALGNAQP TDMGSDTKGG 120
  121 PPARPRAPPQ PPGSADTDTK GATRRHASAG PSTQQGVSAT HRPRHGQRGN AHKATTPTLA 180
  181 PASQGLARKR APDQGDKPTG AGNSGHTPSL RGAPTHADTQ RAPQRGTRGD AHTPTLTTHP 240
  241 RRGCGMPHSP GISAAAGQGD TSGSPAARRV CTHPGPPPAS LGAGSSLRRR CRSCRRSRHL 300
  301 RPSTSADGGR EWAAALKGGA SRGRAARLRS RTPPPPPSPW RFAGSRRPRF PLFSPTAAPG 360
  361 RPLRRELSAE VAEVSRGARV GVRRTRGRGP PHTLPRMRNI NLHEWAGPGA WAPRPSRPAC 420
  421 WLSKAPGKMV ENSPSPLPER AIYGFVLFLS SQFGFILYLV WAFIPESWLN SLGLTYWPQK 480
  481 YWAVALPVYL LITIVIAYVL LFGINMMSTS PLDSIHTITD NYAKNQQQKK YQEEAIPALR 540
  541 DISISEVNHM FFLAAKELYT KN

Type	Start	End	Confidence
Cytoplasmic	1	440	0.53
Transmembrane Helix	441	464	0.90
Non-Cytoplasmic	465	480	0.53
Transmembrane Helix	481	504	0.89
Cytoplasmic	505	562	0.54