YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109052638
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHGAGLVRT TCSSGSALGP GAGAAQPSAS PLEGLLDPSY PRTHAALLKV AQMVTLLIAF  60
   61 ICVRSSPWTN YSAYSYFEVV TICDLIMILA FYLVHLFRFY RVLTCISWPL SELLHYLIGT 120
  121 LLLLIASIVA ASKSYNQSGL VAGAIFGFMA TFLCMASVWL SYKISCVTQS TDTAV

Type	Start	End	Confidence
Cytoplasmic	1	44	0.75
Transmembrane Helix	45	68	0.78
Non-Cytoplasmic	69	73	0.74
Transmembrane Helix	74	97	0.86
Cytoplasmic	98	112	0.72
Transmembrane Helix	113	132	0.94
Non-Cytoplasmic	133	139	0.68
Transmembrane Helix	140	161	0.93
Cytoplasmic	162	175	0.78