YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109052604
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	64	0.58
Transmembrane Helix	65	91	0.76
Non-Cytoplasmic	92	132	0.54
Transmembrane Helix	133	156	0.87
Cytoplasmic	157	167	0.46
Transmembrane Helix	168	187	0.88
Non-Cytoplasmic	188	194	0.48
Transmembrane Helix	195	216	0.85
Cytoplasmic	217	233	0.40
Transmembrane Helix	234	257	0.51
Non-Cytoplasmic	258	260	0.56
Transmembrane Helix	261	281	0.85
Cytoplasmic	282	288	0.87
Transmembrane Helix	289	310	0.92
Non-Cytoplasmic	311	319	0.78
Transmembrane Helix	320	339	0.94
Cytoplasmic	340	349	0.92
Transmembrane Helix	350	373	0.91
Non-Cytoplasmic	374	411	0.93
Transmembrane Helix	412	432	0.92
Cytoplasmic	433	440	0.83
Transmembrane Helix	441	459	0.83
Non-Cytoplasmic	460	460	0.39
Transmembrane Helix	461	483	0.64
Cytoplasmic	484	536	0.58
Transmembrane Helix	537	556	0.90
Non-Cytoplasmic	557	825	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPSAPESK HKSSLNSSPW SGLMALGNSR HGHHGPGAQC AHKAGGAAPP KPAPAGLSGG  60
   61 LSQPAGWQSL LSFTILFLAW LAGFSSRLFA VIRFESIIHE FDPWFNYRST HHLASHGFYE 120
  121 FLNWFDERAW YPLGRIVGGT VYPGLMITAG LIHWILNTLN ITVHIRDVCV FLAPTFSGLT 180
  181 SISTFLLTRE LWNQGAGLLA ACFIAIVPGY ISRSVAGSFD NEGIAIFALQ FTYYLWVKSV 240
  241 KTGSVFWTMC CCLSYFYMVS AWGGYVFIIN LIPLHVFVLL LMQRYSKRVY IAYSTFYIVG 300
  301 LILSMQIPFV GFQPIRTSEH MAAAGVFALL QAYAFLQYLR DRLTKQEFQT LFFLGVSLAA 360
  361 GAVFLSVIYL TYTGYIAPWS GRFYSLWDTG YAKIHIPIIA SVSEHQPTTW VSFFFDLHIL 420
  421 VCTFPAGLWF CIKNINDERV FVALYAISAV YFAGVMVRLM LTLTPVVCML SAIAFSNVFE 480
  481 HYLGDDMKRE NPPVEDSSDE DDKRNPGNLY DKAGKVRKHV TEQEKTEEGL GPNIKSIVTM 540
  541 LMLMLLMMFA VHCTWVTSNA YSSPSVVLAS YNHDGTRNIL DDFREAYFWL RQNTDEHARV 600
  601 MSWWDYGYQI AGMANRTTLV DNNTWNNSHI ALVGKAMSSN ETAAYKIMRT LDVDYVLVIF 660
  661 GGVIGYSGDD INKFLWMVRI AEGEHPKDIR ESDYFTPQGE FRVDKAGSPT LLNCLMYKMS 720
  721 YYRFGEMQLD FRTPPGFDRT RNAEIGNKDI KFKHLEEAFT SEHWLVRIYK VKAPDNRETL 780
  781 DHKPRVTNIF PKQKYLSKKT TKRKRGYIKN KLVFKKGKKI SKKTV