YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109049370
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAAPVLVAR AASLSLGFLF LLFFWLDRGV LAKELKFVTL VFRHGDRSPI DTFPTDPIKE  60
   61 SSWPQGFGQL TQLGMEQHYE LGEYVRKRYR TFLNESYKHE QVYIRSTDVD RTLMSAMTNL 120
  121 AALFPPEGVS IWNPNLLWQP IPVHTVPLSE DQLLYLPFRN CPRFQELGSE TLTSEEFQKR 180
  181 LHPYKDFIAT LGKLSGFHDK DLFGIWSKIY DPLYCESVHN FTLPSWATED AMTKLRELSE 240
  241 LSLLSLYGIH KQKEKSRLQG GVLVNEILNH MKRATQMPSY KKLIMYSTHD TTVSGLQVAL 300
  301 DVFNGLLPPY AACHLMELYF EKGEYFVEMY YRNETQHEPY LLTLPGCSSS CPLERFAELV 360
  361 GPVIPQDWPT ECMTTSSHQV LKVIFAVVFC LISAVLMVLL FIHIRRGPCW QRDSYGNI

Type	Start	End	Confidence
Signal Peptide	1	32	0.99
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	382	0.99
Transmembrane Helix	383	404	0.94
Cytoplasmic	405	418	0.98