YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109039192
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVQSCIPFT FNMSVLREKN IIQIHLTNPQ QRKSYKNSQN PIDIKSLECI SSHLIGKCCD  60
   61 APGIPPGSEI PLLRAPTSRS PQRLAAAAFT AGDGGDGDAA PARPASSAPA PQAPGPSPLS 120
  121 GRPQRRAKQA QRGSPAAGVL AEKRPSPWRR GARWRPLGRA GTVKDSFRDG ARGSRHPTAL 180
  181 TVNPSRPRDA STRRPPPPPP QLPSRAARRD KSARRLAMVR GGDMGCIGPS ETSASGAAAI 240
  241 ALPGVEGPTG NAQFQTLALT VHKSRSPSPR SLPPAVGCPP PQPAMLEHLS SLPTQMDYKG 300
  301 QKLAEQMFQG IILFSAIVGF IYGYVAEQFG WTVYIVMAGF AFSCLLTLPP WPIYRRHPLK 360
  361 WLPVQDSSTD DKKPGERKIK RHAKNN

Type	Start	End	Confidence
Cytoplasmic	1	305	0.95
Transmembrane Helix	306	326	0.90
Non-Cytoplasmic	327	331	0.82
Transmembrane Helix	332	353	0.92
Cytoplasmic	354	386	0.95