YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109039141
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSPAGNASR GLPGGPPSTV ASGAGRCESG ALMHSFGIFL QGLLGVVAFS TLMLKRFREP  60
   61 KHERRPWRIW FLDTSKQAIG MLFIHFANVY LADLTEEDPC SLYLINFLLD ATVGMLLIYV 120
  121 GVRAVSVLVE WQQWESLRFG EYGDPLQCGA WVGQCALYIV IMIFEKSVVF IVLLILQWKK 180
  181 VALLNPIENP DLKLAIVMLI VPFFVNALMF WVVDNFLMRK GKTKAKLEER GANQDSRNGS 240
  241 KVRYRRAASH EESESEILIS ADDEMEESDV EEDLRRLTPL KPVKKKKHRF GLPAGAQEAP 300
  301 IKKKRPPVKE EDLKGARGNL TKNQEIKSKT YQVMRECEQA GSAAPSVFSR TRTGTETVFE 360
  361 KPKAGPAKSV FG

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.91
Transmembrane Helix	32	54	0.88
Cytoplasmic	55	68	0.91
Transmembrane Helix	69	92	0.77
Non-Cytoplasmic	93	102	0.83
Transmembrane Helix	103	127	0.79
Cytoplasmic	128	154	0.78
Transmembrane Helix	155	176	0.82
Non-Cytoplasmic	177	193	0.87
Transmembrane Helix	194	213	0.96
Cytoplasmic	214	372	0.94