YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109018230
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRYSGKTCR LLFMLVLTVA FFVAELVSGY LGNSIALLSD SFNMLSDLIS LCVGLSAGYI  60
   61 ARRPTGGFSA TYGYARAEVV GALSNAVFLT ALCFTIFVEA VLRLARPERI DDPKLVLIVG 120
  121 VLGLLVNVVG LLIFQDCAAW FACCRRGRRR RLQQRQQLAE DYVPSAFGGP QGAEDPRRAA 180
  181 APTAPGSDSA VTLRGTSVER KREKGATVFS NVAGDSFNTQ NEPEEVMKKE KKSEALNIRG 240
  241 VLLHVMGDAL GSVVVVITAI IFYVLPLKSE DPCNWQCYID PSLTVLMVII ILSSAFPLIK 300
  301 ETAAILLQMV PKGVNMEELM SKLSAVPGIS SVHEVHIWEL VSGKIIATLH IKYPKDRGYQ 360
  361 DASTKIREIF HSAGIHNVTI QFENVDLKEP LEQKDLLLLC NSPCISKSCA KQLCCPPGAL 420
  421 PLAHVNGCAE HNGGPSLDTY GSDGLSRRDT REVAIEVSLD GCLSDHGQTL NKTQEDQCYV 480
  481 NSTHF

Type	Start	End	Confidence
Cytoplasmic	1	10	0.89
Transmembrane Helix	11	32	0.91
Non-Cytoplasmic	33	41	0.80
Transmembrane Helix	42	61	0.91
Cytoplasmic	62	78	0.87
Transmembrane Helix	79	101	0.88
Non-Cytoplasmic	102	117	0.86
Transmembrane Helix	118	143	0.88
Cytoplasmic	144	240	0.98
Transmembrane Helix	241	265	0.89
Non-Cytoplasmic	266	277	0.92
Transmembrane Helix	278	299	0.84
Cytoplasmic	300	485	0.92