YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109017569, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.83
Transmembrane Helix	12	35	0.84
Non-Cytoplasmic	36	92	0.84
Transmembrane Helix	93	115	0.86
Cytoplasmic	116	123	0.84
Transmembrane Helix	124	141	0.55
Non-Cytoplasmic	142	147	0.38
Transmembrane Helix	148	166	0.41
Cytoplasmic	167	225	0.79
Transmembrane Helix	226	247	0.92
Non-Cytoplasmic	248	283	0.87
Transmembrane Helix	284	302	0.85
Cytoplasmic	303	307	0.54
Transmembrane Helix	308	327	0.68
Non-Cytoplasmic	328	334	0.53
Transmembrane Helix	335	350	0.74
Cytoplasmic	351	357	0.60
Transmembrane Helix	358	378	0.91
Non-Cytoplasmic	379	385	0.79
Transmembrane Helix	386	408	0.92
Cytoplasmic	409	423	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSTKHWGEW LLNLKLAPAG VFGVAFLARV ALVFYGVFQD RTLHVRYTDI DYQVFTDAAR  60
   61 FVTEGRSPYL RATYRYTPLL GWLLTPNIYL SELFGKFLFI SCDLLTAFLL YRLLLLKGLA 120
  121 RRQACGYCVF WLLNPLPMAV SSRGNADSIV ASLVLMVLYL IRKRVVACAA VFYGFAVHMK 180
  181 IYPVTYILPI TLHLLPDRDN DKSLRQSRYT FQAHLYELLK RLCDRAVLLF LAVAGLTFFA 240
  241 LSFGFYYEYG WEFLEHTYFY HLTRRDIRHN FSPYFYMLYL TAESKWSFSL GIAAFLPQFI 300
  301 LLSAVSFAYY RDLVFCCFLH TSIFVTFNKV CTSQYFLWYL CLLPLVMPLV RMTWKRAVVL 360
  361 LMLWFIGQAL WLAPAYVLEF QGKNTFLFIW LAGLFFLLIN SSILIQIISH YKEEPLTERI 420
  421 KYD