YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109015264
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDWSFLGNI LEEVNEHSTV IGRVWLTVLF IFRILILGTA AEFVWGDEQS DFVCNTQQPG  60
   61 CENVCYDEAF PISHIRLWVL QIIFVSTPSL MYVGHAVHYV RMKEKRKSRE AEELGQQAGA 120
  121 NGGERGPLSP DQGNVKKSSG SKGTKKFRLE GTLLRTYICH IIFKTLFEVG FIVGHYFLYG 180
  181 FRILPLYRCS RWPCPNVVDC FVSRPTEKTI FILFMLSVAS VSLFLNVMEL GHLGLKGIRS 240
  241 AFKRPVEQPL GEIPEKSLHS IAVSSIQKAK GYQLLEEEKI VSHYFPLTEV GMVETAKPFS 300
  301 QFEEKITTGP PEDLSRGYQE TLPSYAQVGA QEVEGEGPPA EEGAEPEVGE KKPEEERLTM 360
  361 EEQEKVAVPE GEEVETPGVG KEGEKEELQS EKVSKQGLPA EKTPSLCQEL TTDEARPLSR 420
  421 LSKASSRARS DDLTV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	41	0.91
Non-Cytoplasmic	42	76	0.95
Transmembrane Helix	77	99	0.92
Cytoplasmic	100	155	0.97
Transmembrane Helix	156	178	0.84
Non-Cytoplasmic	179	210	0.89
Transmembrane Helix	211	233	0.88
Cytoplasmic	234	435	0.91