YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109013482
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	81	0.96
Transmembrane Helix	82	106	0.88
Non-Cytoplasmic	107	114	0.78
Transmembrane Helix	115	132	0.94
Cytoplasmic	133	154	0.81
Transmembrane Helix	155	175	0.73
Non-Cytoplasmic	176	180	0.61
Transmembrane Helix	181	201	0.88
Cytoplasmic	202	212	0.55
Transmembrane Helix	213	235	0.80
Non-Cytoplasmic	236	247	0.60
Transmembrane Helix	248	269	0.88
Cytoplasmic	270	279	0.60
Transmembrane Helix	280	303	0.86
Non-Cytoplasmic	304	316	0.56
Transmembrane Helix	317	336	0.56
Cytoplasmic	337	343	0.51
Transmembrane Helix	344	363	0.43
Non-Cytoplasmic	364	369	0.74
Transmembrane Helix	370	390	0.75
Cytoplasmic	391	444	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGHRSTRKR CGDSHPESPV GFGHMSTTGC VLNKLFQLPT PPLSRHQLKR LEEHRYQSAG  60
   61 RSLLEPLMQG YWEWLVRRVP SWIAPNLITI IGLSINICTT ILLVFYCPTA TEQAPLWAYI 120
  121 ACACGLFIYQ SLDAIDGKQA RRTNSSSPLG ELFDHGCDSL STVFVVLGTC IAVQLGTNPD 180
  181 WMFFCCFAGT FMFYCAHWQT YVSGTLRFGI IDVTEVQIFI IIMHLLAVIG GPPFWQSMIP 240
  241 VLNIQMKIFP ALCTVAGTIF SCTNYFRVIF TGGVGKNGST IAGTSVLSPF LHIGSVITLA 300
  301 AMIYKKSTVQ LFEKHPCLYI LTFGFVSAKI TNKLVVAHMT KSEMHLHDTA FIGPALLFLD 360
  361 QYFNSFIDEY IVLWIALVFS FFDLIRYCVS VCNQIASHLH IHVFRIKGKN VSAEIPSSLA 420
  421 KELNCAAQNK DQLEVGCPRL KVKD