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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109011607
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGQSLPRAG RPFQQSPGEA AVSSRAATTV GAAKELKCSQ PGRPTSLHHN SRYLLWMPAV  60
   61 PTIHTQDLSP ERDSDKVENR QQTSILEQRK SGTKAGGMSL RSSKSRGRPP AQGRGGAGSA 120
  121 SVVKVHILGA AAARWLKQQG REASQPFPPT RAGPQLTAGE LGRNPCREEA DPVDHGARSR 180
  181 RTRRRGEREA ALRPARPSPA RPRPQPQPRL AGAESPRTGG GGGSQAPAPA CQRKMHCLGA 240
  241 EYLVSAERAP RQREWRPQIY RKCTDTAWLF LFFLFWTGLV FIMGYSVVAG AAGRLLFGYD 300
  301 SFGNVCGKKN SPVEGAPLSG QDMTLKKHVF FMNSCNQVKG MRLDRTALCV SSCPEEQLDS 360
  361 LEEVQLFANT SGSFLCVYSL NSSNYTHSPK ADSLCPRLPV PPSKSFPLFN RCIPQTPECY 420
  421 SLFASVWIND GDTLHRILSG IMSGRDTILG LCILTLALSL AMMFTFRFIT TLLVNIFISL 480
  481 VILGLLFVCG VLWWLYYDYT NDLSIELDTE RENMKCVLGF AIVSTGITAV LLVLIFVLRK 540
  541 RIKLTVELFQ ITNKAISSAP FLLFQPLWTF AILIFFWVLW VAVLLSLGTA GAAQVMEGGQ 600
  601 VEYKPLSGIR YMWSYHLIGL IWTSEFILAC QQMTIAGAVV TCYFNRSKND PPDRPILSSL 660
  661 SILFFYHQGT VVKGSFLIPV VRLPRIIVMY MQNALKEQQH GALSRYLFRC CYSCFWCLDK 720
  721 YLLHLNQNAY TTTAINGTDF CTSAKDAFKI LSKNSSHFTS INCFGDFIIF LGKVLVVCFT 780
  781 VFGGLMAFNY NRAFQVWAVP LLLVAFFAYL VAHSFLSVFE TVLDALFLCF AVDLETNDGS 840
  841 SEKPYFMDQE FLSFVKRSNK LNNARARQDE HSLRNDEGTE LQAIAR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle