YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109011445
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHSVLSPV VDTDAPDQHL ELKKPQELKE MERLPLVNED KTMSANLKYL SLGILVFQTT  60
   61 SLVLTMRYSR TLKEEGPRYL SSTAVVVAEL LKIMACILLV YKDSKCSLRA LNRVLHDEIL 120
  121 NKPMETLKLA IPSGIYTLQN NLLYVALSNL DAATYQVTYQ LKILTTALFS VSMLSKKLGV 180
  181 YQWLSLVILM TGVAFVQWPS DSQLDSKELS AGSQFVGLMA VLTACFSSGF AGVYFEKILK 240
  241 ETKQSVWIRN IQLGFFGSIF GLMGVYIYDG ELVSKNGFFQ GYNRLTWIVV VLQALGGLVI 300
  301 AAVIKYADNI LKGFATSLSI ILSTLISYFW LQDFVPTSVF FLGAILVITA TFLYGYDPKP 360
  361 AGNPTKA

Type	Start	End	Confidence
Cytoplasmic	1	178	0.79
Transmembrane Helix	179	198	0.95
Non-Cytoplasmic	199	214	0.86
Transmembrane Helix	215	235	0.95
Cytoplasmic	236	245	0.93
Transmembrane Helix	246	268	0.90
Non-Cytoplasmic	269	284	0.91
Transmembrane Helix	285	304	0.95
Cytoplasmic	305	312	0.72
Transmembrane Helix	313	331	0.94
Non-Cytoplasmic	332	336	0.84
Transmembrane Helix	337	356	0.93
Cytoplasmic	357	367	0.92