YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCDS505.1_1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGLALLYSG VFVAFWACAL AVGICYTIFD LGFRFDVAWF LTETSPFMWS NLGIGLAISL  60
   61 SVVGAAWGIY ITGSSIIGGG VKAPRIKTKN LVSIIFCEAV AIYGIIMAIV ISNMAEPFSA 120
  121 TDPKAIGHRN YHAGYSMFGA GLTVGLSNLF CGVCVGIVGS GAALADAQNP SLFVKILIVE 180
  181 IFGSAIGLFG VIVAILQTSR VKMGD

Type	Start	End	Confidence
Cytoplasmic	1	7	0.86
Transmembrane Helix	8	30	0.90
Non-Cytoplasmic	31	51	0.82
Transmembrane Helix	52	71	0.94
Cytoplasmic	72	90	0.80
Transmembrane Helix	91	111	0.95
Non-Cytoplasmic	112	139	0.86
Transmembrane Helix	140	164	0.87
Cytoplasmic	165	172	0.85
Transmembrane Helix	173	196	0.90
Non-Cytoplasmic	197	205	0.87