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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109003419
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPEPAPGRT MVPLVPALVM LGLVAGAHGD SKPVFIKVPE DQTGLSGGVA SFVCQATGEP  60
   61 KPRITWMKKG KKVSSQRFEV IEFDDGAGSV LRIQPLRVQR DEAIYECTAT NSLGEINTSA 120
  121 KLSVLEEEQL PPGFPSIDMG PQLKVVEKAR TATMLCAAGG NPDPEISWFK DFLPVDPATS 180
  181 NGRIKQLRSG ALQIESSEES DQGKYECVAT NSAGTRYSAP ANLYVRVRRV APRFSIPPSS 240
  241 QEVMPGGSVN LTCVAVGAPM PYVKWMMGVE ELTKEDEMPV GRNVLELSNV VRSANYTCVA 300
  301 ISSLGMIEAT AQVTVKALPK PPIDLVVTET TATSVTLTWD SGNSEPISYY GIQYRAAGTE 360
  361 GPFQEVDGVA TTRYSIGGLS PFSEYAFRVL AVNSIGRGPP SEAVRARTGE QAPSSPPRRV 420
  421 QARMLSASTM LVQWEPPEEP NGLVRGYRVY YTPDSRRPPS AWHKHNTDAG LLTTVGSLLP 480
  481 GITYSLRVLA FTAVGDGPPS PTIQVKTQQG VPAQPADFQA EVESDTRIQL SWLLPPQERI 540
  541 IMYELVYWVA EDEDQQHKVT FDPTSSYTLE DLKPDTLYRF QLAARSDMGV GVFTPTIEAR 600
  601 TAQSTPSAPP QKVMCVSTGS TTVRVSWVPP PADSRNGVIT QYSVAYEAVD GEDRRRHVVD 660
  661 GISREHSSWD LVGLEKWTEY RVWVRAHTDV GPGPESSPVL VRTDEDVPPS GPKRVSQDRR 720
  721 NLGHLAWRPV DRGQTGTVGV LGLEDPTLRL GDTKGLSRSE SFTILSPFLS LSRGQWRPEE 780
  781 SEDYETTISG LTPETTYSIT VAAYTTKGDG ARSKPKIVTT TGAVPGRPTV MVSTTAMNTA 840
  841 LLQWHPPKDL PGELLGYRLQ YCRADEARPN TIDFGKDDQH FTVTGLHKGT TYIFRLAARN 900
  901 RAGLGEEFQK EIRTPEDLPS GFPQNLRVTG LTTSTTELAW DPPVLAERNG RIVSYTVVFR 960
  961 DINSQQELQN ITTDTHFTLS GLKPDTTYDI KVRAWTSKGS GPLSPSIQSR TMPVEQVFAK1020
 1021 NFRVAAAMKT SVLLSWEVPD SYKSAVPFKI LYNGQSVEVD GHSMRKLIAD LQPNTEYSFV1080
 1081 LMNRGSSAGG LQHLVSIRTA PDLLPHKPLP ASAYIEDGRF ALSMPHVQDP SLVRWFYIVV1140
 1141 VPIDRVGGSM LAPRWSTPEE LELDELLEAI EQGGEEQRRR RRQAERLKPY VAAQLDVLPK1200
 1201 TFTLGDKKNY RGFYNRPLSP DLSYQCFVLA SLKEPMDQKR YASSPYSDEI VVQVTPAQQQ1260
 1261 EEPEMLWVTG PVLAVILIIL IVIAILLFKR KRTHSPSSKD EQSIGLKDSL LAHSSDPVEM1320
 1321 RRLNYQTPGM RDHPPIPITD LADNIERLKA NDGLKFSQEY ESIDPGQQFT WENSNLEVNK1380
 1381 PKNRYANVIA YDHSRVILTS IDGVPGSDYI NANYIDGYRK QNAYIATQGP LPETMGDFWR1440
 1441 MVWEQRTATV VMMTRLEEKS RVKCDQYWPA RGTETYGLIQ VTLLDTVELA TYTVRTFALH1500
 1501 KSGSSEKREL RQFQFMAWPD HGVPEYPTPI LAFLRRVKAC NPLDAGPMVV HCSAGVGRTG1560
 1561 CFIVIDAMLE RMKHEKTVDI YGHVTCMRSQ RNYMVQTEDQ YVFIHEALLE AATCGHTEVP1620
 1621 ARNLYAHIQK LGQVPPGESV TAMELEFKLL ASSKAHTSRF ISANLPCNKF KNRLVNIMPY1680
 1681 ELTRVCLQPI RGVEGSDYIN ASFLDGYRQQ KAYIATQGPL AESTEDFWRM LWEHNSTIIV1740
 1741 MLTKLREMGR EKCHQYWPAE RSARYQYFVV DPMAEYNMPQ YILREFKVTD ARDGQSRTIR1800
 1801 QFQFTDWPEQ GVPKTGEGFI DFIGQVHKTK EQFGQDGPIT VHCSAGVGRT GVFITLSIVL1860
 1861 ERMRYEGVVD MFQTVKTLRT QRPAMVQTED QYQLCYRAAL EYLGSFDHYA T

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle