YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108998563, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWKKLGSRN FSSCPNGSIQ WIWDVLGECA QDGWDEASVG LGLISILCFA ASTFPQFIKA  60
   61 YKTGNMDQAL SLWFLLGWIG GDSCNLIGSF LADQLPLQSY TAVYYVMADL VMLTLYFYYK 120
  121 FRKRPSPLSA PINSMLLFLM GTACATPLLS AAGPVAAPRE GFRGRALLSV EPGSKPFTRQ 180
  181 EIIGFVIGSV SSVLYLLSRL PQIRTNFLRK STQGISYSLF ALVMLGNTLY GLSVLLKNPE 240
  241 EGQSEGSYLL HHLPWLVGSL GVLLLDTIIS IQFLVYRRSA AASELEPLLL PS

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.72
Transmembrane Helix	37	58	0.81
Cytoplasmic	59	69	0.87
Transmembrane Helix	70	92	0.91
Non-Cytoplasmic	93	99	0.87
Transmembrane Helix	100	119	0.95
Cytoplasmic	120	134	0.81
Transmembrane Helix	135	156	0.89
Non-Cytoplasmic	157	181	0.87
Transmembrane Helix	182	198	0.97
Cytoplasmic	199	213	0.87
Transmembrane Helix	214	234	0.92
Non-Cytoplasmic	235	252	0.87
Transmembrane Helix	253	275	0.90
Cytoplasmic	276	292	0.97