YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108995736
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAAASPPE VIRAAQKDEY YRGGLRSAAG GALHSLAGAR KWLEWRKEVE LLSDVAYFGL  60
   61 TTLAGYQTLG EEYVSIVQVD PSQTRVPSWL RRGVLVTLHA VLPYLLDKVL LPLEQELQAD 120
  121 PDSGRPSQGS LVPGGRGCSG VRRWVRRHTA TLTEQQRRAL LRAAFVLRQG LTCLQRLHVA 180
  181 WFYIHGVFYH LAKRLTGITY LRVRSLPGED LRARVSYRLL GVVSLLHLVL SVGLQLYGFR 240
  241 QRQRARKEWR LHRGLSHRRG SLEERAVSRN PLCTLCLEER RHPTATPCGH LFCWECITAW 300
  301 CSSKAECPLC REKFPPQKLI YLRHYR

Type	Start	End	Confidence
Cytoplasmic	1	164	0.61
Transmembrane Helix	165	185	0.40
Non-Cytoplasmic	186	216	0.67
Transmembrane Helix	217	239	0.85
Cytoplasmic	240	326	0.67