YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|103423772, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	311	0.78
Transmembrane Helix	312	333	0.90
Non-Cytoplasmic	334	344	0.63
Transmembrane Helix	345	367	0.91
Cytoplasmic	368	375	0.63
Transmembrane Helix	376	399	0.81
Non-Cytoplasmic	400	406	0.70
Transmembrane Helix	407	428	0.90
Cytoplasmic	429	445	0.74
Transmembrane Helix	446	465	0.95
Non-Cytoplasmic	466	482	0.61
Transmembrane Helix	483	507	0.73
Cytoplasmic	508	528	0.60
Transmembrane Helix	529	553	0.86
Non-Cytoplasmic	554	564	0.60
Transmembrane Helix	565	584	0.73
Cytoplasmic	585	590	0.64
Transmembrane Helix	591	613	0.87
Non-Cytoplasmic	614	628	0.77
Transmembrane Helix	629	650	0.93
Cytoplasmic	651	656	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIKDILSPE SMIMDLQATT KDEAINEMAD LEVATGIVNN KEKFVESIWA REKESTTGIG  60
   61 GGIAMPHARN EYINKARVLF AKSEKGVDYD SLDQQPVHLF FMITAPAGAD NTHLQALAKL 120
  121 SSLLINPDLV EKLKAAKTAD EVIDLFSQAE ADKDKEDAER EAKLAAKKEA EAKAASDEKP 180
  181 LIVGVTACIN GIAHTYMAEE ALIKAGEKRG VEVRIETNGS EGVKHELTAD EIKRAKGVII 240
  241 ASDKQVKMAR FDGKKLVKHP VVDGINKPDQ LIDEILSGKG SVYHAEAGEA SESSAASDGS 300
  301 VWSTIYRHLM SGISHMLPFV IGGGILMAIS FLVEQYMGGA KSPAFIFLNS AGNLAFAFMV 360
  361 PVLAGYIAES IGDLPALMPG FVGGFMASIT NSSLGGSYVV NANAKAASPA GFLGGIAIGF 420
  421 IAGYLILGLK KLFVKLPKNV EGMKPMLLYP IFGLLFVALI MYYIINPVFG ALNGVITNFL 480
  481 NGMGTGNLVL LTTILAGMMS IDMGGPFNKA AYVFASGAFA NDPTSKTSAI LMASVMVGGM 540
  541 VAPLATAIAT TFFKNKFTED ERRAGVSNWI LGFSFITEGA IPFASADPLH VIVSSIVGSA 600
  601 VGGTLVGLWH VGVPAPHGGF WVIALSSNWL GYLGAVAVGS IVAALMMGFW KKPIEK