YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|103422541, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.90
Transmembrane Helix	16	38	0.86
Non-Cytoplasmic	39	44	0.79
Transmembrane Helix	45	64	0.91
Cytoplasmic	65	69	0.80
Transmembrane Helix	70	91	0.87
Non-Cytoplasmic	92	96	0.88
Transmembrane Helix	97	118	0.92
Cytoplasmic	119	127	0.74
Transmembrane Helix	128	146	0.95
Non-Cytoplasmic	147	163	0.85
Transmembrane Helix	164	182	0.94
Cytoplasmic	183	190	0.69
Transmembrane Helix	191	213	0.90
Non-Cytoplasmic	214	236	0.83
Transmembrane Helix	237	258	0.90
Cytoplasmic	259	312	0.70
Transmembrane Helix	313	333	0.64
Non-Cytoplasmic	334	335	0.42
Transmembrane Helix	336	358	0.81
Cytoplasmic	359	370	0.83
Transmembrane Helix	371	392	0.94
Non-Cytoplasmic	393	400	0.85
Transmembrane Helix	401	421	0.92
Cytoplasmic	422	430	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQTQEPSQG RSFVLGLQHL LAMYSGAVAV PILIGNALHF NSEQLTYLIS IDIFMCGLAT  60
   61 LLQLLRNRYF GIGLPVVLGC AIQAVAPLEM IGQKYSIGTM YGSIIVAGGF VFLIAGVFSK 120
  121 IKRLFPPVVT GTLITTIGLT LIPVGIQNLG GGSATAKDFG DPKNLLVGCV TILVIVALQA 180
  181 FAKGFIASIS ILIGLIVGTL LAACLGMVSL TPVSEAAWLH FPQFFYFGLP KFEWSSSLTM 240
  241 MIIALVSMVE STGVFFALGD LLGKDITEDD LKRGYRAEGL AQIFGGLFNT FPYTTFSQNV 300
  301 GLLQLSGIRS KRPIYWTAGL LMAMGLLPKV GALVTIIPTA VLGGAMVVMF SSISVQGIKM 360
  361 LLKVDFSDNH NLLIVAISLG LGLGVSVYPT IFQALPSELQ LFLENGIVIA SISSVLLNLI 420
  421 FKGKKGLDEK