YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108810030, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTIKNQSMK PKKNHNSAEK LPTLAGVLRR IHLSVAIVSV VTACIFLTVA ALFALRVYVD  60
   61 HNLHLIARAI SYTTEAAVVF GDNVEANELL ALIASNEEVA EAKIIDKHNR QIAYWALPDD 120
  121 GPIHHMEQIV ARWILPAPVV LPMFHAGDEI GKIVIVGHGG SLLRFLLQGL AGMLACLTVS 180
  181 TLVALFLSRR MLLGIVGSLK RITEVAHNVS RHRSFGQRVP SAKVAELNEL SNDFNGLLEE 240
  241 LEVWQKHLTQ ENDSLAYRAA HDSLTGLANR TFFEGRLSRT LNDCQPGEHT AVLFLDGDHF 300
  301 KDVNDNYGHA AGDLVLTTIA VRIRALLRET DLVARLGGDE FAVLLTPIHN LDDVLTIADH 360
  361 IIDSMALPII LAEGCEITVS LSIGIAVYPD HAQTPEKLLQ RADEAMYQAK KNFRSGKRIF 420
  421 AYQPNTTNTE SLG

Type	Start	End	Confidence
Cytoplasmic	1	32	0.79
Transmembrane Helix	33	55	0.92
Non-Cytoplasmic	56	164	0.71
Transmembrane Helix	165	187	0.90
Cytoplasmic	188	433	0.64