YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108807190, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAELDPGLY AQFIHQPAHV DWLAMLSFDT HQLSVWVSQY FWPLVRVLAL IGTAPLLSEK  60
   61 QINKKVKIGL GVLITFLIAP SLPPVNIPLF SSAALWVAIQ QILIGVALGV TMQFAFAAVR 120
  121 LSGEVIGLQM GLSFATFFDP SGGPNMPVLS RLLNILVTLL FLSFDGHLWL ISLLADSFHT 180
  181 LPIQFAPLNG NGFLTLAQSG SMIFMNGLML ALPLITLLLT LNMALGMLNR MTPQLSVFVI 240
  241 GFPLTLTVGI ISLGLIMPLL APFTEHLFSE FFDRLAEVLS GMAN

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.66
Transmembrane Helix	38	57	0.67
Cytoplasmic	58	67	0.83
Transmembrane Helix	68	87	0.90
Non-Cytoplasmic	88	96	0.64
Transmembrane Helix	97	119	0.80
Cytoplasmic	120	151	0.72
Transmembrane Helix	152	171	0.88
Non-Cytoplasmic	172	201	0.70
Transmembrane Helix	202	225	0.84
Cytoplasmic	226	236	0.77
Transmembrane Helix	237	261	0.90
Non-Cytoplasmic	262	284	0.91