YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|107953688
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.76
Transmembrane Helix	30	46	0.46
Non-Cytoplasmic	47	67	0.62
Transmembrane Helix	68	90	0.64
Cytoplasmic	91	158	0.95
Transmembrane Helix	159	181	0.91
Non-Cytoplasmic	182	198	0.83
Transmembrane Helix	199	217	0.92
Cytoplasmic	218	226	0.67
Transmembrane Helix	227	250	0.89
Non-Cytoplasmic	251	273	0.86
Transmembrane Helix	274	294	0.88
Cytoplasmic	295	303	0.65
Transmembrane Helix	304	327	0.83
Non-Cytoplasmic	328	352	0.80
Transmembrane Helix	353	376	0.86
Cytoplasmic	377	400	0.79
Transmembrane Helix	401	421	0.81
Non-Cytoplasmic	422	429	0.66
Transmembrane Helix	430	452	0.91
Cytoplasmic	453	457	0.67
Transmembrane Helix	458	479	0.90
Non-Cytoplasmic	480	485	0.67
Transmembrane Helix	486	506	0.93
Cytoplasmic	507	539	0.67
Transmembrane Helix	540	559	0.48
Non-Cytoplasmic	560	777	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPMFEKMEL VVIFDYPILL QKESWRTVLA LAYQSLGVVY GDLSTSPLYV YKSTFAEDIQ  60
   61 HSESNDEIFG VLSFVFWTLT LIPLLKYVFI VLRADDNGEG GTFALYSLLC RHARVSTLPN 120
  121 GQLADEDLYE YKNDRNLSAD RIGMSLKSTL EKHRFLKKIL LILALIGTCM VIGDGVLTPA 180
  181 ISVFSAVSGL ELSMAKHHHQ YVEVPVACVI LVFLFFLQHY GTHRIGFLFA PIVITWLLCI 240
  241 SAIGLHNIFL WNPHVYQALS PYYMYKFLKK TQRGGWMSLG GILLCITGSE AMFADLGHFS 300
  301 QLSIQIAFTF VVYPSLILAY MGQAAYLSKH HVIQGDYHIG FYVSVPEKLR YPVLAIAILA 360
  361 AVVGSQVIIT GTFSIIKQCS ALGCFPRVKI VHTSSKIHGQ IYIPEINWTL MSLCLVVTIG 420
  421 FRDTKHISNA SGLAVITVML VTTCFMSLVI VLCWHKNVLL AICFIFFFGS IEALYFSASL 480
  481 IKFLEGAWVP IVLSLIFLVV MYSWHYGTLK KYEFDVENKI PINWLLTLSP NLGITRVRGI 540
  541 GLIHTELVSG IPAIFSHFVT NLPAFHQVLV FLCVKSVPVP HVRPEERFLV GRIGPKEYRV 600
  601 YRCIARYGYR DIHMDDVEFE KDLVCSIAEF IRSEGPAQSF ETVEGIDDNE KLTVIGTTST 660
  661 HVDGVTMCED VDTKDTEMIE ISSPEVPRKR VRFLVPESPQ MDLSVRAELQ ELMEAREAGM 720
  721 AFILGHCYVR AKRGSSLIKK LVVDIGYDFL RRNCRGPTYA LSFPRASTLE VGMIYHV