YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|107785178, gi...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAVLNSTI SGLTSSASIT TVFEEVSKYN VQLNVFERLW AAWYLWMQND TIATGIMSFV  60
   61 MHEFVYFGRS LPWIIIDAIP FFNKYKLQNT KVPTWKEQWE CAGLVLLSHC TVELPQIWLF 120
  121 HPVATYFGLD YGVPFPPAWK MAMQIAIFFA VEDAWHYWMH RALHYGPLYK SIHKLHHTYS 180
  181 APFGLAAEYA SPIEVMLLGF GIVGTPIIWV SITGELHLIT MYLWIVLRLF QAIDAHSGYD 240
  241 FPWSLRRILP FWAGADHHDL HHERFIGNYA SSFRWWDYCL DTEAGEAASK QRRERKLAEI 300
  301 RAKKAQ

Type	Start	End	Confidence
Cytoplasmic	1	45	0.63
Transmembrane Helix	46	66	0.56
Non-Cytoplasmic	67	137	0.43
Transmembrane Helix	138	159	0.70
Cytoplasmic	160	178	0.62
Transmembrane Helix	179	193	0.53
Non-Cytoplasmic	194	194	0.32
Transmembrane Helix	195	226	0.69
Cytoplasmic	227	306	0.80