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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HMDH_PIG
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRLFRMHG LFVASHPWEV IVGTVTLTIC MMSMNMFTGN DKICGWNYEC PKFEEDVLSS  60
   61 DIIILTITRC IAILYIYFQF QNLRQLGSKY ILGIAGLFTI FSSFVFSTVV IHFLDKELTG 120
  121 LNEALPFFLL LIDLSRASAL AKFALSSNSQ DEVRENIARG MAILGPTFTL DALVECLVIG 180
  181 VGTMSGVRQL EIMCCFGCMS VLATYFVFMT FFPACVSLVL ELSRESREGR PIWQLSHFAR 240
  241 VLEGEENKPN PVTQRVKIIM SLGLVLVHAH SRWIADPSPQ NSTADNSKVS LGLDENVSKR 300
  301 IEPSVSLWQF YLSKMISMDI EQVITLTLAL LLAVKYIFFE QAETESTLSL KNPITSPVVT 360
  361 QKKVTDDCCR REPTLVRNDQ KFHTVEEEAR INRERKVEVI KPLVAETDTS SRPTFVVGNS 420
  421 TLDSSLELEM QEPEIQIPSE PRPNEECLQI LGNAEKGAKF LSDAEIIQLV NAKHIPAYKL 480
  481 ETLMETHERG VSIRRQLLSK KLPEPSSLQY LPYRDYNYSL VMGACCENVI GYMPIPVGVA 540
  541 GPLCLDGKEF QVPMATTEGC LVASTNRGCR AIGLGGGASS RILADGMTPV VRFPRACDSA 600
  601 EVKAWLETPE GFAVIKEAFD STSRFARLQK LQMSVAGRNL YIRFQSRSGD AMGMNMISKG 660
  661 TEKALSKLHE YFPEMQILAV SGNYCTDKKP AAVNWIEGRG KSVVCEAVIP AKVVREVLKT 720
  721 TTEAMVEVNI NKNLVGSAMA GSIGGYNAHA ANIVTAIYIA CGQDAAQNVG SSNCITLMEA 780
  781 SGPTNEDLYI SCTMPSIEIG TVGGGTSLLP QQACLQMLGV QGACKDNPGE NARQLARIVC 840
  841 GTVMAGELSL MAALAAGHLV RSHMIHNRSK INLQDLQGTC TKKAA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle