YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108466521, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPTREPMF GDGCAGFLCR LPTGGRDARR LGLRSALASG AVTMAFTDER KPEILTPDSR  60
   61 PRVNSAAWGG PFIMGILMVL LGIVALGAAF FTSLVSAILF GAMLAAAGVM EVISAFRTRK 120
  121 EGGPFWLYLL SGILSVVVGL FILVYPAAGL GAMTLLLAGY FFASGLFHAV TSVMDRYPRW 180
  181 GWDFFYGAVS IFLGIVVMRQ WPISAVWLVG TLVGIGIFFR GVALMAGALT VRKVLRSGGP 240
  241 TTPASISH

Type	Start	End	Confidence
Cytoplasmic	1	66	0.96
Transmembrane Helix	67	89	0.90
Non-Cytoplasmic	90	94	0.69
Transmembrane Helix	95	116	0.90
Cytoplasmic	117	124	0.88
Transmembrane Helix	125	145	0.95
Non-Cytoplasmic	146	151	0.69
Transmembrane Helix	152	171	0.94
Cytoplasmic	172	179	0.85
Transmembrane Helix	180	199	0.91
Non-Cytoplasmic	200	206	0.64
Transmembrane Helix	207	229	0.88
Cytoplasmic	230	248	0.94