YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KUP_MYXXD
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.96
Transmembrane Helix	37	59	0.88
Non-Cytoplasmic	60	75	0.89
Transmembrane Helix	76	98	0.90
Cytoplasmic	99	131	0.96
Transmembrane Helix	132	154	0.88
Non-Cytoplasmic	155	167	0.77
Transmembrane Helix	168	188	0.92
Cytoplasmic	189	195	0.85
Transmembrane Helix	196	216	0.91
Non-Cytoplasmic	217	241	0.90
Transmembrane Helix	242	264	0.92
Cytoplasmic	265	275	0.86
Transmembrane Helix	276	297	0.90
Non-Cytoplasmic	298	315	0.93
Transmembrane Helix	316	340	0.89
Cytoplasmic	341	367	0.89
Transmembrane Helix	368	388	0.92
Non-Cytoplasmic	389	394	0.80
Transmembrane Helix	395	416	0.94
Cytoplasmic	417	425	0.84
Transmembrane Helix	426	445	0.96
Non-Cytoplasmic	446	452	0.80
Transmembrane Helix	453	471	0.95
Cytoplasmic	472	653	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQARVQLKR GFVKATTTGV PGGEDVKKGP DTFKRSALLA LGALGIVYGD IGTSPLYALR  60
   61 ECFTGAHGIP PTPANVLGVL SLIFWSLIIV VSVKYLLLVM KADNRGEGGI LAMMALVMQR 120
  121 QRAQPSHRSR PMLITLGIFG AALLYGDGII TPAITVLSAV EGLHVATAVF DPYVIPIALV 180
  181 ILVALFLVQR HGTADIGAVF GPVMCIWFLT LAGLGVKELV HNPAVLGALS PWHAVELFRH 240
  241 NHLHGFLVLG GVFLVVTGCE ALYADMGHFG RKPIQLAWFS MVLPALMLNY LGQGALLLRD 300
  301 ASAARNPFFL LAPSWLLYPL VALATVAGVI ASQALIAGVF SLTRQAMQLG YSPRMEVVHT 360
  361 SAEEMGQIYL PGLNWALLVG VVALVLGFRS SSALASAYGI AVSTAMVITT LMAYVVAREL 420
  421 WGVRRWVAIP VVGLFLSVEL AFFGANAVKV ADGGWFPLLM AVVVFTLMTT WKRGRDILAA 480
  481 KLRASSIPLK VLLGSFGDHP PVRVPGTAIF MTGNAEGTPP ALLHNLKHNK VLHEQVVLLT 540
  541 ILSEELPHVP HSERVEVEPL EQGFVRVVAR YGFMENPGIP DVLKRCREKG LQFQLMGTSF 600
  601 FLGRETLIPT KRPGMAVWRE ALFAWMSRNA RSATAYFRIP PNRVVELGAQ VEL