YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108460962, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.99
Transmembrane Helix	39	62	0.92
Non-Cytoplasmic	63	82	0.92
Transmembrane Helix	83	103	0.96
Cytoplasmic	104	116	0.84
Transmembrane Helix	117	135	0.93
Non-Cytoplasmic	136	160	0.90
Transmembrane Helix	161	183	0.88
Cytoplasmic	184	222	0.92
Transmembrane Helix	223	243	0.94
Non-Cytoplasmic	244	261	0.89
Transmembrane Helix	262	285	0.90
Cytoplasmic	286	302	0.89
Transmembrane Helix	303	323	0.95
Non-Cytoplasmic	324	342	0.91
Transmembrane Helix	343	362	0.96
Cytoplasmic	363	370	0.88
Transmembrane Helix	371	391	0.93
Non-Cytoplasmic	392	413	0.83
Transmembrane Helix	414	435	0.89
Cytoplasmic	436	492	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNQHLSPLR EPLVTEPRSL GQLTEEICAP MERAPTWKWW VAFGIAVSVL GTGAGIVGYQ  60
   61 VATGIGVWGL NKTIGWAFDI TNFVFWVGIG HAGTLISAIL FLFRQKWRTS INRAAEAMTL 120
  121 FAVMCAALFP VIHMGRPWLA FWVLPYPNDR GSLWVNFRSP LLWDVFAIST YFTVSAVFWY 180
  181 VGLIPDLATV RDRAKAGIRK AVFKVMSLGW TGSNRTWSRY ETVYLLLAGL ATPLVLSVHT 240
  241 IVSMDFATSV IPGWHTTIFP PYFVAGAVFS GFAMVLTLMI ITRVVLGYEH LITLRHLENM 300
  301 TKIIIVTGGL VSLAYATEFF IAWYSGNPYE RFAFMNRAFG PYAWAYWIMV TCNVVSPHLF 360
  361 WFKKIRTSPA AIFVLSLVIN VGMWFERFVI IVTSLHRDFL PSSWAMYTPT MVEVGTFIGT 420
  421 FGLFFTLFLL FVRVLPIISI GEVKSVLGFA RDGHAAQSHP PAKPVAEEPH PVAHRPASPV 480
  481 PLAIATRKDA PV