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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|105922933, gi...
Protein type: Transmembrane
Type Confidence: 0.80
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQLNCDVCG PIPALDSAAQ CAFAFPFISF DFFSPKSPSS LQCKKGIRKK SMKLIGIFMA  60
   61 STSVQGITSS SSSSSSPPQY MYDVFLSFRG KDTRNNFTSH LYSNLAQRGI DVYMDDRELE 120
  121 RGKTIEPALW KAIEESRFSV IIFSGDYASS PWCLDELVKI VQCMKEMGHT VLPVFYDVDP 180
  181 SEVAERKGQY QKAFVEHEQN FKENLEKVWI WKDCLSTVTN LSGWDVRKRN ESESIEIIAE 240
  241 YISYKLSVTM PVSKNLIGMD SRLEILNGYI GEEVGEAIFI GICGMGGIGK TTVARVVYDR 300
  301 FRWQFKGSCF LANVREVFDE KDGPRRLQEQ LVSEILMKRA NICDSSRGIE MIKRKLQRKK 360
  361 ILIVLDDVDD RKQLESLAAE SKWFGPGSRI IITSRDRQVL TRNGVARIYE AEKLNDDDAL 420
  421 MLFSQKAFKN DQPAEDFVEL SKQVVGYANG LPLALEVIGS FMHGRSILEW GSAINRLNEI 480
  481 PDREIIDVLR ISFDGLHELE KKIFLDIACF LKGFKKDRII RILDSCGFHA HIGTQVLIEK 540
  541 SLISVSRDQV WMHNLLQIMG KEIVRCESPE EPGRRSRLWT YEDVCLALMD NTGKEKIEAI 600
  601 FLDIPGIKEA QWNMKAFSKM SKLRLLKINN VQLSEGPEDL SNKLRFLEWH SYPSKSLPAG 660
  661 LQVDELVELH MANSSIEQLW YGYKSAVKLK IINLSNSLYL SKSPDLTGIP NLESLILEGC 720
  721 ISLSEVHPSL GRHKKLQYVN LINCRSIRIL PSNLEMESLK FFTLDGCSKL ENFPDIVGNM 780
  781 NCLMKLCLDR TGIAELSPSI RHMIGLEVLS MNNCKKLESI SRSIECLKSL KKLDLSGCSE 840
  841 LKNIPGNLEK VESLEEFDVS GTSIRQLPAS IFLLKNLAVL SLDGLRACNL RALPEDIGCL 900
  901 SSLKSLDLSR NNFVSLPRSI NQLSGLEKLV LEDCTMLESL LEVPSKVQTV NLNGCISLKT 960
  961 IPDPIKLSSS QRSEFMCLDC WELYEHNGQD SMGSIMLERY LQGLSNPRPG FRIVVPGNEI1020
 1021 PGWFNHQKLK EWQHGSFSNI ELSFHSYERG VKVKNCGVCL LSSVYITPQP SALFTVTSKE1080
 1081 AASSYKTSLA FSSSYHQWTT YVFPGIRVTD TSNAFTYLKS DLALRFIMPA EKEPEKVMAI1140
 1141 RSRLFEAIEE SGLSIIIFAS DWASLPWCFG ELVKIVGFMN EMRLDTVFPV SYDVKQSKID1200
 1201 DQKESYTIVF DKIGKDVREN EEKVQRWMDI LSEVEISSGS KRRSRKAITS CQPSLSTAQP1260
 1261 PCHQSPSHLQ KREHLSEQQL QLEQLQQRMQ QLQQLQRRRR RQRPEKLQQR QERQEQLQRL1320
 1321 QQLQRRQERL QLLQVQPQEL LQQQMQLLQR HFGLQLLQQQ LVEHLLLEQQ LPGFWFGI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle