YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|104744493
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYKDDDDKS PRSMKDNTVP LKLIALLANG EFHSGEQLGE TLGMSRAAIN KHIQTLRDWG  60
   61 VDVFTVPGKG YSLPEPIQLL NAKQILGQLD GGSVAVLPVI DSTNQYLLDR IGELKSGDAC 120
  121 IAEYQQAGRG RRGRKWFSPF GANLYLSMFW RLEQGPAAAI GLSLVIGIVM AEVLRKLGAD 180
  181 KVRVKWPNDL YLQDRKLAGI LVELTGKTGD AAQIVIGAGI NMAMRRVEES VVNQGWITLQ 240
  241 EAGINLDRNT LAAMLIRELR AALELFEQEG LAPYLSRWEK LDNFINRPVK LIIGDKEIFG 300
  301 ISRGIDKQGA LLLEQDGIIK PWMGGEISLR SAEK

Type	Start	End	Confidence
Cytoplasmic	1	135	0.54
Transmembrane Helix	136	150	0.49
Non-Cytoplasmic	151	156	0.77
Transmembrane Helix	157	175	0.70
Cytoplasmic	176	334	0.68