YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62822571
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.69
Transmembrane Helix	31	55	0.85
Non-Cytoplasmic	56	80	0.66
Transmembrane Helix	81	104	0.81
Cytoplasmic	105	111	0.65
Transmembrane Helix	112	133	0.91
Non-Cytoplasmic	134	139	0.54
Transmembrane Helix	140	166	0.71
Cytoplasmic	167	177	0.53
Transmembrane Helix	178	200	0.93
Non-Cytoplasmic	201	228	0.56
Transmembrane Helix	229	250	0.89
Cytoplasmic	251	266	0.51
Transmembrane Helix	267	281	0.34
Non-Cytoplasmic	282	287	0.53
Transmembrane Helix	288	307	0.92
Cytoplasmic	308	319	0.65
Transmembrane Helix	320	340	0.90
Non-Cytoplasmic	341	347	0.68
Transmembrane Helix	348	372	0.85
Cytoplasmic	373	381	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNIRKKHPL LKIINESFID LPTPSNISSW WNFGSLLGLC LVIQILTGLF LAMHYTSDTT  60
   61 TAFSSVTHIC RDVNYGWLIR YMHANGASMF FICLFLHVGR GMYYGSYTFK ETWNIGVVLL 120
  121 FAVMATAFMG YVLPWGQMSF WGATVITNLL SAIPYIGTTL VEWIWGGFSV DKATLTRFFA 180
  181 FHFILPFIIT ALVVVHLLFL HETGSNNPSG LNSDADKIPF HPYYTIKDIL GILLLLMVLM 240
  241 ILVLFFPDIL GDPDNYTPAN PLNTPAHIKP EWYFLFAYAI LRSIPNKLGG VMALVLSILI 300
  301 LALLPLLQTS KQRGLMFRPI SQVLFWILVA NLFVLTWIGG QPVEYPFVMI GQLASISYST 360
  361 IIIILMPVHG IIENNMLKFT H