YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|93115982, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	511	0.82
Transmembrane Helix	512	534	0.90
Cytoplasmic	535	540	0.58
Transmembrane Helix	541	564	0.83
Non-Cytoplasmic	565	591	0.58
Transmembrane Helix	592	614	0.67
Cytoplasmic	615	622	0.51
Transmembrane Helix	623	643	0.92
Non-Cytoplasmic	644	649	0.47
Transmembrane Helix	650	664	0.68
Cytoplasmic	665	665	0.00
Transmembrane Helix	666	680	0.77
Non-Cytoplasmic	681	759	0.45
Transmembrane Helix	760	781	0.86
Cytoplasmic	782	1193	0.54
Transmembrane Helix	1194	1214	0.82
Non-Cytoplasmic	1215	1226	0.58
Transmembrane Helix	1227	1249	0.81
Cytoplasmic	1250	1266	0.65
Transmembrane Helix	1267	1291	0.77
Non-Cytoplasmic	1292	1313	0.67
Transmembrane Helix	1314	1336	0.86
Cytoplasmic	1337	1346	0.60
Transmembrane Helix	1347	1373	0.80
Non-Cytoplasmic	1374	1464	0.80
Transmembrane Helix	1465	1486	0.94
Cytoplasmic	1487	1499	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTANTSLSQ QLDEKPWVDA SDNSSVQEYQ GFDATASHNI QDLARKLTHD STNGDHHSAN  60
   61 DLARYLSHMS DIPGVSPFNG NISHEKLDPD SENFNAKYWV KNLKKLFESD SDYYKPSKLG 120
  121 VAYRNLRAYG IANDSDYQPT VSNALWKFTT EAINKLKKPD DSKYFDILKS MDAIMRPGEL 180
  181 TVVLGRPGAG CSTLLKTIAV NTYGFHIGKE SQITYDGLSP HDIERHYRGD VIYSAETDVH 240
  241 FPHLSVGDTL EFAARLRTPQ NRGEGIDRET YAKHMASVYM ATYGLSHTRN TNVGNDFVRG 300
  301 VSGGERKRVS IAEASLSGAN IQCWDNATRG LDSATALEFI RALKTSATIL DTTPLIAIYQ 360
  361 CSQDAYELFD NVVVLYEGYQ IFFGKASKAK EYFENMGWKC PQRQTTADFL TSLTNPAERE 420
  421 PLPGYEDKVP RTAQEFETFW KNSPEYAELT KEIDEYFVEC ERSNTGETYR ESHVAKQSNN 480
  481 TRPSSPYTVS FFMQVRYVIA RNFLRMKGDP SIPLISILSQ LVMGLILASV FFNLRKSTDT 540
  541 FYFRGGALFF SVLFNAFSSL LEILSLYEAR PIVEKHRKYA LYRPSADALA SIISELPVKL 600
  601 LMTMSFNIVY YFMVNLRRTA GNFFFYWLMC ALCTLVMSHM FRSIGAVTTT IATAMSLSTV 660
  661 FLLAMIIYAG FVLPIPYILG WSKWIRYINP VTYIFESLMV NEFHGREFEC GQYIPSGPSF 720
  721 ENLPVENKVC TTVGSTPGST AVQGTEYIKL AYQFYSSHKW RNFGITVAFA VFFLGVYVAL 780
  781 TEFNKGAMQK GEIVLFLKGS LKKHKRKTAA SSKGDIEAGP VAGKLDYQDE AEAVNNEKFT 840
  841 EKGSTGSVDF PENREIFFWK DLTYQVKIKK EDRVILDHVD GWVKPGQITA LMGASGAGKT 900
  901 TLLNCLSERV TTGIITDGER LVNGHALDSS FQRSIGYVQQ QDVHLETTTV REALQFSAYL 960
  961 RQSNKISKKE KDDYVDYVID LLEMTDYADA LVGVAGEGLN VEQRKRLTIG VELVAKPKLL1020
 1021 LFLDEPTSGL DSQTAWSICK LMRKLADHGQ AILCTIHQPS ALIMAEFDRL LFLQKGGRTA1080
 1081 YFGELGENCQ TMINYFEKYG ANPCPKEANP AEWMLQVVGA APGSHAKQDY FEVWRNSSEY1140
 1141 QAVREEINRM EAELSKLPRD NDPEALLKYA APLWKQYLLV SWRTIVQDWR SPGYIYSKLI1200
 1201 LVISSSLFIG FSFFKSKNNL QGLQSQMLAV FMFFVPFTTF IDQMLPYFVK HRAVYEVREA1260
 1261 PSRTFSWFAF IAGQITSEIP FQIVVGTISY FCWYYPVGLY ANAEPTDSVN SRGVLMWMLL1320
 1321 TAFYVYTSTM GQLAISFNEL IDNAANLATT LFTLCLMFCG VLAGPNVIPG FWIFMYRCNP1380
 1381 FTYLIQAILS TGLANAKVTC APRELVTLKP PMGETCSSFI GPYTEAAGGY FSTNSDGTCS1440
 1441 VCRIDSTNQF LESINALFSQ RWRNFGIFVA FIGINIILTI FFYWLARVPK GNREKKMKK