YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71068362
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	105	0.79
Transmembrane Helix	106	124	0.79
Non-Cytoplasmic	125	144	0.60
Transmembrane Helix	145	166	0.87
Cytoplasmic	167	172	0.58
Transmembrane Helix	173	196	0.90
Non-Cytoplasmic	197	225	0.50
Transmembrane Helix	226	252	0.81
Cytoplasmic	253	263	0.47
Transmembrane Helix	264	285	0.85
Non-Cytoplasmic	286	301	0.53
Transmembrane Helix	302	325	0.89
Cytoplasmic	326	357	0.51
Transmembrane Helix	358	376	0.54
Non-Cytoplasmic	377	396	0.72
Transmembrane Helix	397	420	0.83
Cytoplasmic	421	430	0.67
Transmembrane Helix	431	454	0.83
Non-Cytoplasmic	455	535	0.42
Transmembrane Helix	536	558	0.83
Cytoplasmic	559	623	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAVLQTKGL FSLPPNPKTR ASLYPSQGLR HRLFAAKPKT LSGLSLSSNG FPKFPSFVSK  60
   61 PNGFPPKDGN LHICRAEAAA AAEGQPLFGE PEKPKLLGIE LSTLKKIIPL GLMFFCILFN 120
  121 YTILRDTKDV LVVTAKGSSA EIIPFLKTWV NLPMAIGFML LYTQLANVLS KQALFYTVIV 180
  181 PFIAFFGAFG FLLYPLSNHI HPEAFADKLL NILGPRFLGP IAIMRIWSFC LFYVMAELWG 240
  241 SVVISVLFWG FANQITTVDE AKRFYPLFGL GANVALVFSG RTVKYFSNLR KNLGPGVDGW 300
  301 AISLKGMMSI VVLMGLAICF LYWWVNNFVP LPTRSKKKKE KPKMGTMESL KFLVSSKYIR 360
  361 DLATLVVAYG ISINLVEVTW KSKLKAQFPS PNEYSSFMGD FSTATGIATF TMMLLSQYIF 420
  421 DKYGWGVAAK ITPTVLLLTG VGFFSLILFG GPLAPVLSQF GMTPLLAAVY VGAMQNIFSK 480
  481 SAKYSLFDPC KEMAYIPLDE ETKVKGKAAI DVVCNPLGKS GGALIQQFMI LTFGSLANST 540
  541 PYLGGTLLVI VLLWLAAARS LDTQSTALRR EEELEKEMER AAVKIPVVSP EESGNGSLPG 600
  601 GSSLNPAAGD STSSSSETAP RKL