YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|95112985
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENPEHDQP MPLVSHLTEL RTRLLRCVAA IFLIFAGLFS FAQQIYTLVS APLRAHLPAN  60
   61 ATMIATDVAS PFLTPFKLTM IVSMFLAIPF ILQQIWGFIA PGLYRHEKRI AIPLLVSSIL 120
  121 LFYAGMAFAY FLVFPLMFSF FAAATPEGVS MMTDIASYLD FVMTLFFAFG VAFEIPVAVV 180
  181 LLVWIGVVDV QYLKKIRPYV IIGCFVVGMI LTPPDIFSQT LLAVPMWMLF EVGVLCGGLI 240
  241 RKRSHERDEA PNDHNDQPPA TQP

Type	Start	End	Confidence
Cytoplasmic	1	23	0.97
Transmembrane Helix	24	46	0.87
Non-Cytoplasmic	47	77	0.91
Transmembrane Helix	78	100	0.87
Cytoplasmic	101	111	0.87
Transmembrane Helix	112	142	0.75
Non-Cytoplasmic	143	164	0.88
Transmembrane Helix	165	187	0.94
Cytoplasmic	188	195	0.89
Transmembrane Helix	196	214	0.92
Non-Cytoplasmic	215	220	0.70
Transmembrane Helix	221	240	0.89
Cytoplasmic	241	263	0.92