YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|95111895, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.92
Transmembrane Helix	7	31	0.90
Non-Cytoplasmic	32	39	0.81
Transmembrane Helix	40	59	0.94
Cytoplasmic	60	71	0.86
Transmembrane Helix	72	93	0.91
Non-Cytoplasmic	94	132	0.90
Transmembrane Helix	133	157	0.88
Cytoplasmic	158	177	0.95
Transmembrane Helix	178	201	0.89
Non-Cytoplasmic	202	234	0.92
Transmembrane Helix	235	258	0.90
Cytoplasmic	259	270	0.91
Transmembrane Helix	271	291	0.93
Non-Cytoplasmic	292	330	0.82
Transmembrane Helix	331	353	0.88
Cytoplasmic	354	392	0.86
Transmembrane Helix	393	414	0.93
Non-Cytoplasmic	415	421	0.66
Transmembrane Helix	422	444	0.58
Cytoplasmic	445	454	0.49
Transmembrane Helix	455	480	0.81
Non-Cytoplasmic	481	482	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTLRIIGFI IGIFLITLAV SMVVPMATLV VFERTGDMPS FLWSSLITFV AGLGLVMPGR  60
   61 PEHVHLRPRD MYLLTVSSWL VVCVFAALPF LLTQHISYTD AFFESMSGIT ATGATVLSGL 120
  121 DTMSPGILMW RSMLHWLGGI GFIGMAVAIL PLLRIGGMRL FQTESSDRSE KVMPRSHMVA 180
  181 KSIVAVYVGI TVFGSLAFWW AGMNPFDAIN HAMSAISTGG FSTSDQSLAK WDIPAVHWVA 240
  241 VVVMILGSLP FTLYVATLRG HRKALIKDQQ VQGLLAMLVA TWLVLGTWYW ATTDLHWLDA 300
  301 LRHVALNVTS VVTTTGFALG DYSMWGNFSL MLFFYLGFVG GCSGSTAGGI KIFRFQVAYI 360
  361 LLKANLNQLI HPRAVIKQKY NGHRLDEEIV RSILTFSFFF AITICIIALL LSLLGVDWMT 420
  421 ALTGAAGTVS GVGPGLGEVI GPAGNYASLP DAAKWILSGG MLLGRLEIIT VLVLCMPAFW 480
  481 RH