YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|95111857, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEVEVKKAQ ESLQDRLAQV IELLQRQRVV EDLTHRQEGH HHDLVENLVH RQNLVELQRK  60
   61 LDDLHPADIA YILEALPLED RLTVWQLVRS DRDGDILLEV SDAVRQTLIA DMDDHELLAA 120
  121 AKEMDADELA DLAPELPRDV VHELMESLDA QQRERVRSAL SYDEEQVGAL MDFEMVTIRE 180
  181 DVSLEVVLRY LRRLKELPGH TDKLFVVDYD GKLKGVLPIK RLLVNDPEKK VAEVMANDPV 240
  241 VFHPEEDAYD AALAFERYDL VSAPVVDKGE RLIGRLTIDE MVDLIREEGE SEVLNMAGLR 300
  301 EEEDIFASVW RSLRNRWAWL AINLITAFVA SRVIGLFEGS IEKLVALAAL MPIVAGIGGN 360
  361 SGNQTITMIV RAMALDQVSP GNTSRLMRKE LAVSLLNGLI WGGVIGVVAF WLYGSWSLGL 420
  421 VMTGAMTLNL LLAALMGVLI PMTLARLGRD PAMGSSVMIT AVTDSGGFFI FLGLATLFLL 480
  481

Type	Start	End	Confidence
Cytoplasmic	1	316	0.96
Transmembrane Helix	317	336	0.95
Non-Cytoplasmic	337	343	0.81
Transmembrane Helix	344	366	0.83
Cytoplasmic	367	392	0.88
Transmembrane Helix	393	413	0.95
Non-Cytoplasmic	414	420	0.78
Transmembrane Helix	421	444	0.87
Cytoplasmic	445	455	0.81
Transmembrane Helix	456	478	0.90
Non-Cytoplasmic	479	480	0.83