YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|95111772
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMSWTWFHK LGSPKWFYAI SGRMLPWLTV AAILLLLVGI TWGLAFAPQD YQQGDSFRII  60
   61 YIHVPAAMLA QSCYVLLAVA GVVGLVWKMK LADVALQCAA PIGAWMTAVA LVTGAIWGKP 120
  121 TWGSWWVWDA RLTSMLILLF LYFGIIALGQ AISNRDSAAK ACAVLAIVGV VNIPIIKYSV 180
  181 EWWNTLHQGA TFTLTEKPAM PVEMWLPLLL TALGFYCFFG AVLLLRMRLE VLKREARASW 240
  241 VRDEVMNSLG RETAR

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	45	0.88
Non-Cytoplasmic	46	63	0.88
Transmembrane Helix	64	87	0.89
Cytoplasmic	88	94	0.88
Transmembrane Helix	95	117	0.90
Non-Cytoplasmic	118	129	0.82
Transmembrane Helix	130	149	0.91
Cytoplasmic	150	160	0.68
Transmembrane Helix	161	180	0.91
Non-Cytoplasmic	181	204	0.95
Transmembrane Helix	205	227	0.89
Cytoplasmic	228	255	0.98