YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|95111548, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.83
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	17	0.83
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	75	0.78
Transmembrane Helix	76	98	0.90
Cytoplasmic	99	105	0.79
Transmembrane Helix	106	126	0.90
Non-Cytoplasmic	127	132	0.62
Transmembrane Helix	133	152	0.88
Cytoplasmic	153	160	0.73
Transmembrane Helix	161	184	0.90
Non-Cytoplasmic	185	202	0.75
Transmembrane Helix	203	222	0.73
Cytoplasmic	223	239	0.44
Transmembrane Helix	240	261	0.74
Non-Cytoplasmic	262	269	0.51
Transmembrane Helix	270	291	0.94
Cytoplasmic	292	297	0.52
Transmembrane Helix	298	322	0.72
Non-Cytoplasmic	323	323	0.30
Transmembrane Helix	324	346	0.60
Cytoplasmic	347	360	0.86
Transmembrane Helix	361	384	0.87
Non-Cytoplasmic	385	404	0.85
Transmembrane Helix	405	427	0.84
Cytoplasmic	428	458	0.93
Transmembrane Helix	459	483	0.89
Non-Cytoplasmic	484	501	0.87
Transmembrane Helix	502	523	0.93
Cytoplasmic	524	572	0.98
Transmembrane Helix	573	594	0.92
Non-Cytoplasmic	595	601	0.88
Transmembrane Helix	602	624	0.89
Cytoplasmic	625	630	0.89
Transmembrane Helix	631	651	0.95
Non-Cytoplasmic	652	657	0.76
Transmembrane Helix	658	679	0.91
Cytoplasmic	680	699	0.98
Transmembrane Helix	700	722	0.90
Non-Cytoplasmic	723	758	0.95
Transmembrane Helix	759	777	0.96
Cytoplasmic	778	816	0.94
Transmembrane Helix	817	841	0.81
Non-Cytoplasmic	842	848	0.84
Transmembrane Helix	849	868	0.94
Cytoplasmic	869	883	0.83
Transmembrane Helix	884	907	0.88
Non-Cytoplasmic	908	926	0.91
Transmembrane Helix	927	950	0.89
Cytoplasmic	951	968	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLIVLLLLP FLGSCLAAIL PHNARNAESI LAGLVALVGT VQVALLYPQI ADGGVIREEL  60
   61 LWLPSLGLNL VLRMDGFAWL FSLLVLGIGT LVSLYARYYM SPQDPVPRFF AFFLAFMGAM 120
  121 LGLVISGNLI QLVFFWELTS LFSFLLIGYW HHRADARRGA YMALMVTGAG GLCLLVGALL 180
  181 LGHVVGSYDL DKVLAAGDII RQHALYPVLL PLILVGALSK SAQFPFQFWL PHAMAAPTPV 240
  241 SAYLHSATMV KAGVFLLARL WPALSGSEEW FWIVGGAGAA TLLLGAFAAM FQNDLKGLLA 300
  301 YSTISHLGLI TLLLGLNSPL AAVAAVFHIL NHATFKASLF MAAGIIDHES GTRDIRRLSG 360
  361 LFRLVPFTAT LAMVASASMA GVPLMNGFLS KEMFFAETVF ITSSAWVEAA LPVIATLAGT 420
  421 FSVAYALRFT VDVFFGPPAQ DLPHTPHEPP RWMRAPVELL VLTCLVVGIF PAQSVGPLLA 480
  481 AAALPVVGGT LPEYSLAIWH GWNAPLMMSL IAMTGGIVLY LLLRKQLQRG RFPHPPLIER 540
  541 FNGKRLFEHG LVRLMLLARR IERLLTTRRL QKQLFMLVLA AFIAGLVPLL YSGLSWGDRP 600
  601 KIPGSGVFVA LWLIAIACAI GAAYQAKYHR LAALIMVSVC GLMTCITFVW FSAPDLALTQ 660
  661 LAVEVVTTVL ILLGLRWLPR RIEGVSPLAG TQERARLRRL RDLVLAVLVG GGMALLSYAM 720
  721 LTRPTPNDIS SFYLSRALPQ GGGTNVVNVM LVDFRGFDTL GEVTVLVAVA LTVFALLRRF 780
  781 RPPKESMQLP AQQRQLAPDV VTDLVNPRHA TDTALGFMMV PAALVRLLLP IALLVSMYLF 840
  841 MRGHNQPGGG FVAGLVMSVA FILQYMVAGT QWVEAQMSLR PLRWMGTGLL CATLTGAGAM 900
  901 LFGYPFLTTH TAHLHVPLLG DVHVASALFF DIGVYTVVVG STLLILTALA HQSVRAYRPA 960
  961 KSSQAGAA