YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|95109975
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.86
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLKFRHKIL LSACGVVVLA FALFTLYNDY LQRNTIRQNI EASVRQAGLQ TASSVQNWMS  60
   61 GRILVLENLA QDIAQQGAGN NIPGLVDQPS YTSNFQFTYF GQSTGLFTQR PDAKMPDGYD 120
  121 PRQRPWYTQA VAANQTMLTP PYQAAVGGLV VTIAMPVKAK SSGELIGVVG GDLSLNTLVD 180
  181 IINAVDFGGI GHAFLVDRNG QVIVSPNKER VMKNLKDIYP GSPLRVEPGI QEVSLDGKDR 240
  241 IISFAPVEGL PSAQWYIGLS IDKEKAYAPL SQFRTSAIIA MLIAVAVIAG LLGLLIPVLM 300
  301 RPLTTMGRAM QDIAEGEGDL TRRLVVEQKD EFGELATSFN RFVERIHASI SEVSSATRLV 360
  361 HDLSEKVVGA SNASLTGSEE QSMRTNSVAA AINELGAATQ EIARNAADAS QHASGASEQA 420
  421 NGGREVVEEA ISAMTALSQR ISESCEQIET LNASTDEIGK ILDVIKGISQ QTNLLALNAA 480
  481 IEAARAGEAG RGFAVVADEV RNLAHRTQES AEEIHRMITS LQVGSREAVH TMNTSQVSSE 540
  541 QTVQVANQAG ERLASVTQRI GEIDGMNQSV ATATEEQTAV VESLNLDITQ INALNQQGVE 600
  601 NLNETLRHCD ALSQQAGRLK QLVGSFRI

Type	Start	End	Confidence
Signal Peptide	1	22	0.86
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	276	0.98
Transmembrane Helix	277	300	0.92
Cytoplasmic	301	628	0.96