YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|95109576
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.87
Transmembrane Helix	7	26	0.97
Cytoplasmic	27	38	0.90
Transmembrane Helix	39	59	0.93
Non-Cytoplasmic	60	66	0.79
Transmembrane Helix	67	87	0.91
Cytoplasmic	88	114	0.88
Transmembrane Helix	115	134	0.95
Non-Cytoplasmic	135	160	0.87
Transmembrane Helix	161	181	0.90
Cytoplasmic	182	192	0.84
Transmembrane Helix	193	214	0.85
Non-Cytoplasmic	215	244	0.87
Transmembrane Helix	245	264	0.91
Cytoplasmic	265	282	0.88
Transmembrane Helix	283	305	0.90
Non-Cytoplasmic	306	327	0.91
Transmembrane Helix	328	355	0.79
Cytoplasmic	356	381	0.88
Transmembrane Helix	382	403	0.89
Non-Cytoplasmic	404	409	0.81
Transmembrane Helix	410	433	0.88
Cytoplasmic	434	440	0.86
Transmembrane Helix	441	467	0.81
Non-Cytoplasmic	468	487	0.61
Transmembrane Helix	488	511	0.83
Cytoplasmic	512	730	0.61
Transmembrane Helix	731	745	0.32
Non-Cytoplasmic	746	1158	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSSGLIAV VALAYMAIMF AIAFYGDRRS TPLPPRLRAW VYSLSLAVYC TSWTFFGAVG  60
   61 QAAEQLWAFL PIYLGPMLLL IFAPWVVQKM VLISKQQNIT SIADFIAARY GKSQTLAVVV 120
  121 ALICLVGVLP YIALQLKGIV LGVNLLIGAN ADATGSRVQD TALVISLVLA LFAIVFGTRS 180
  181 LDVTEHHRGM VLAIAFESLV KLLAFLAVGA FVVFNLYDGF DDLFTQARQS VHLESYWQET 240
  241 INWPSMVVQT AVAMMAIICL PRQFHVTVVE NIEPQDMRLA RWVFPLYLAL AALFVVPIAL 300
  301 AGQMLLPGTV ISDSFVISLP LAEAHPSLAL LAFIGGASAA TGMVIVEAVA LSTMVSNDML 360
  361 LPWLLRRNNA ERPFEAFRHW MLSVRRVTIV VILLLAYVSY RLLGSTASLA TIGQIAFAAV 420
  421 TQLTPAMLGA LYWKQANRRG VFAGLAAGIF LWFYTLVLPI TAHSLGWSLS LFPGLAWLHG 480
  481 NPLNLPITPL TQGVVLSLAG NFTLFAWVSI LSRTRVSEHW QAGRFIGQQT SARPSSKPLL 540
  541 AVQIDDLLKL AARFVGEERA RQSFIRFAYR QGKGFNPNQN ADGDWIEHTE RLLAGVLGTS 600
  601 STRAVVKAAI EGREMQLEDV VRIADEASEV LQFNRALLQG AIENINQGIS VVDQNLRLVA 660
  661 WNRRYLELFN YPDGLISVGR PIADIIRYNA ERGLCGPGEA QVHVARRLHW MRQGRAHSSE 720
  721 RLFPNGRVIE LIGNPMPGGG FVMSFTDITP FREAEQALRD SNESLEQRVA ERTHELSQLN 780
  781 QALTEAKSRA EAVSQSKTRF LAAVSHDLMQ PLNAARLFSA ALSQQAEGMN DEAQQLVQHM 840
  841 DSSLRSAEEL ISDLLDISRL ENGKVTPDVK PFALNELFDT LGAEFKVLAA EKGLEFRLRG 900
  901 SRLRVDSDMK LLRRILQNFL TNALRYGKSP LLLGARRQGE RLWLEVWDRG PGIADDKLQV 960
  961 IFQEFKRLDS HQTRAEKGLG LGLAIADGLC RVLGHQLEVR SWPGKGSVFR VSVPIARSPA1020
 1021 PAVAAPVEQA GQPLAGLQVL CVDNEDSILI GMNSLLGRWG CQVWTARNQA ECEALLAEGL1080
 1081 RPHLALVDYH LDDGETGTGL MGWLRARLGE PVPGVVISAD GRNETIAMVH AAGLDYLAKP1140
 1141 VKPAALRALL NRHLSLVQ