YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|95109557
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVALLTVAG VALDALLGEP KRRHPLVGFG NLAKSLERRF NAGGRGWRSH GVSAWFLAVV  60
   61 PLTLVALILS WLPYIGWIVD VLALYCALGL RSLGEHVLPV AQALRQGDLE EARRRVGYLV 120
  121 SRETRELDEP AVARAATESV LENGSDAVFA ALFWFVIAGA PGVVLYRLSN TLDAMWGYRN 180
  181 ERFERFGWCA ARIDDGLNYI PARLVALTYA LLGKTRLALS CWRRQGPQWD SPNAGPVMAS 240
  241 GAGALGVELG GPAVYHGELH ERPRLGDGPM ADADAIGRGW SLVQRGVWLW LLVICLGGYV 300
  301 NA

Type	Start	End	Confidence
Cytoplasmic	1	51	0.93
Transmembrane Helix	52	75	0.87
Non-Cytoplasmic	76	146	0.81
Transmembrane Helix	147	169	0.88
Cytoplasmic	170	281	0.72
Transmembrane Helix	282	300	0.73
Non-Cytoplasmic	301	302	0.51