YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|104779404, gi...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.38
Transmembrane Helix	7	32	0.77
Cytoplasmic	33	37	0.34
Transmembrane Helix	38	65	0.76
Non-Cytoplasmic	66	94	0.45
Transmembrane Helix	95	115	0.63
Cytoplasmic	116	139	0.80
Transmembrane Helix	140	160	0.91
Non-Cytoplasmic	161	170	0.83
Transmembrane Helix	171	193	0.92
Cytoplasmic	194	202	0.83
Transmembrane Helix	203	225	0.90
Non-Cytoplasmic	226	235	0.55
Transmembrane Helix	236	255	0.92
Cytoplasmic	256	277	0.83
Transmembrane Helix	278	297	0.88
Non-Cytoplasmic	298	352	0.82
Transmembrane Helix	353	377	0.76
Cytoplasmic	378	384	0.79
Transmembrane Helix	385	408	0.89
Non-Cytoplasmic	409	409	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNGLWLGFF LVAAISALAQ WLVGGNAGIF AAMVESIFAM AKLSVEVMVL LFGTLTLWLG  60
   61 FLKIAEKAGI VEWLAKVLGP LFARLMPEVP PGHPALGLIT MNFAANGLGL DNAATPIGLK 120
  121 AMRSLQELNP SSTTASNAQI LFLVLNASSL TLLPVTIFMY RAQQGAADPT MVFLPILLAT 180
  181 SCSTLVGLLS VAVMQRLRLW DPVVLAYLIP GALLLGGFMA FLGTLSAAAL ASLSSILGNL 240
  241 TLFGVIILFL VIGALRRVQV YEAFVEGAKE GFDVAKSLLP YLVAMLVAVG VLRASGALEL 300
  301 ALDGIRHAVN WMGLDTRFVE GLPTALVKPF SGSAARAMLI ETMQTQGVDS FPALVAATIQ 360
  361 GSTETTFYVL AVYFGAVGIQ RVRHAVGCAL LAELSGVIAA IFVCYWFFG