YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|102139798
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSIGLVRVI SATPRPVAVD NAIENDDIEA VNVTEDEGQD IPEEEAVCRI CLVELAEGGE  60
   61 TLKMECSCKG ELALAHQECA IKWFSIKGNK TCDVCKQEVR NLPVTLLRLQ NRQTVNRRQP 120
  121 NATQRQEAAP YRVWQDVPVL VMVSMLAYFC FLEQLLVTEM GSRALAISLP FSCVLGLLSS 180
  181 MIASTMVSKS YIWAYASFQF AIVILFAHIF YNVLRVSPVL SVLLSSFTGF GIAISTNASL 240
  241 VEYLRWRARR NLRLAQQQSD NRQQQESRNL PDVENGGNVR QHESENQIQN PDPSQQG

Type	Start	End	Confidence
Cytoplasmic	1	132	0.97
Transmembrane Helix	133	156	0.81
Non-Cytoplasmic	157	163	0.77
Transmembrane Helix	164	183	0.94
Cytoplasmic	184	190	0.83
Transmembrane Helix	191	211	0.94
Non-Cytoplasmic	212	218	0.83
Transmembrane Helix	219	241	0.90
Cytoplasmic	242	297	0.96