YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|104391599
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKDVESHVE PAEEYSAKDY HDPPPAPLID FDELSSWSFY RALIAEFVAT LLFLYVTVLT  60
   61 VIGYKSQIDP AHGGDDCGGV GILGIAWAFG GMIFILVYCT AGISGGHINP AVTLGLFLGR 120
  121 KVSLIRAVLY MVAQCLGAIC GVGLVKAFQK SYYHKYGGGA NELAPGYNKG VGLGAEIIGT 180
  181 FVLVYTVFSA TDPKRNARDS HVPVLAPLPI GFAVFMVHLA TIPITGTGIN PARSFGAAVI 240
  241 YNEDKPWDDH WIFWVGPFVG ALIAAIYHQY ILRAGAIKAL GSFRSNA

Type	Start	End	Confidence
Cytoplasmic	1	42	0.93
Transmembrane Helix	43	64	0.90
Non-Cytoplasmic	65	82	0.86
Transmembrane Helix	83	106	0.85
Cytoplasmic	107	126	0.78
Transmembrane Helix	127	148	0.92
Non-Cytoplasmic	149	169	0.91
Transmembrane Helix	170	189	0.93
Cytoplasmic	190	201	0.87
Transmembrane Helix	202	222	0.89
Non-Cytoplasmic	223	249	0.88
Transmembrane Helix	250	271	0.93
Cytoplasmic	272	287	0.95