YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|102140018
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQSTPQFTI SSQLPRSGFQ ESSSQLVPPP PRPASASSSS SFSALHRSFL RKSRAVKDAL  60
   61 PLRRMLPFAL LVLLAVLLVT FLLRVGTVTS SSSFVNMYGG SAVWETDRSL VIHLKSELKL 120
  121 PKQSILSMSL DQRNKLPPRN MDRFPNLAKD HTKIVLYVHN RPQYLRLVVS SLAAVEGISE 180
  181 TMLIVSHDGY FAEMDRIVQD IRFCQAKQIF APYSPHLFPD GFPGVSPGDC HDKDDPIVTK 240
  241 CNGTADQYGN HRSPRTVSLK HHWWWMMNTV WDGMEETKGF SGHILFIEED HYIYPNAYRN 300
  301 LQLLIGLKPM KCPECYAANL SPMDVNSIGE GWDMLVAEKM GNVGYSFNRT VWRKIHTKAK 360
  361 EFCSFDEYNW DITMWATVYP SFGTPVYTLR GPRRSAAHFG KCGLHQGRGK SSSCIDNGEA 420
  421 RFQLDEIDKI LNIKPDWKVH VVKKQSGYQA GFKGWGGWGD ERDRELCLSF AYMYHDVQIS 480
  481 SG

Type	Start	End	Confidence
Cytoplasmic	1	64	0.84
Transmembrane Helix	65	86	0.83
Non-Cytoplasmic	87	482	0.99