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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|93141190, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSWLSLVFS SGCFLLLVDF KGVCGQQAFK TEPRNVTVRA GATALLKCEV LRASGAVQWV  60
   61 KDGLLLRPLR SLPGYPRYSM TGDQKKGQYH LQILDVTLED DGPYECQVGR SESSRPIVSR 120
  121 TVWLNVQIPS SQPYFQLESE EPWVEGEQYT VTCIAPDAKP PAEITIFRDG EELLESESYT 180
  181 MSGSQDKLQN THAEVTIRAR SSDDTRRLTC RAKNPASPRA LETGMTMKVY FPPQAPMIMG 240
  241 LENEEVKAGS FLKVVCMSYG GNPLATLHWT KNGEVLSTSW DVDFVSRRAS SVLKMEVKPE 300
  301 DNHAVLQCQS INQVTRSPMS LTRTLTVPFE PAEVTLLGSF EAVEGEEINL SCSTSSSNPP 360
  361 VHIRWWLGFK ELNRTEVTFA EGDNGGMMTV SNLTHKVSRE DNGLSLQCEA FNKGTRFSSV 420
  421 RAAELIVYYP PQKVWLDAPP PNVFLHSGST LRLVCFSSGG NPTGQLTWLK NNKVVLTASK 480
  481 QVSSERGVSR ELLLTLHPSD NLATYRCDSS NKAKKVLSAQ TKFRVLFPAV SVKIVAKQKE 540
  541 LRRGQTLDLD CLAGSSNPTA NISWSLGPVI LKGVDQAPKR AEFGGMSRTS KLSLTLEPHH 600
  601 WRKRITCQAF SNVLSEGVNN FYSLDVLFPP EFSAEQPDEV QVIEDETATL PAKVSANPDE 660
  661 ITCEWIFQGE KLVKERDPRY TFSDWTLEIV NVSRRDGGDY IIECSNAEGS NRTKLRLDVQ 720
  721 YSPTVRMKSD PVFVNIGDTA DLLCVADANP ITSSMFSWKW MGEGERDELG EESEDDGTGV 780
  781 LTIYEVTRDR AGVYQCTADN GISPTGSVEG QLIVRFAPDL QKGPQWRKVA SRGDGSNDAN 840
  841 VVCQAQGVPR VQFRWAKNGF PLDLGNPRYE ETTESTGTIH TSILTVINVS AALDYAIFTC 900
  901 TAHNSMGEDS LDIQLLSTNH PDPPSDLKLL RVDQTSVTLE WMPGFDGGLT QIFRVRYQWA 960
  961 GSASYMYVDV FPPTATVYTV TGLNPSTMYN FSVNALNSIG ESSYADNNKI LTVTTADAKE1020
 1021 ADGGVSTADQ DSALAGGGLP VYVVVILVVG GVLFLLNPFI CFLLARWKRR RSLKGNTSSI1080
 1081 SQETKSEEQR STASSSTRYA SRELINASAQ RTLLVDSSSE PDSSVYESYG RQENPHYYYP1140
 1141 TEAYSPALYA HPEGPEDCDG RHGTSPFTHV YEEVRGMYED LQACSPLPPA AHIHPQAPFS1200
 1201 TYYEGRAYSK ADVDVTIGAY DSMVYRRRRD TDLPFELRGE LV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle