YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|186478048, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHDILYHRHH LDSYDHLEFP GVVPRTFIGA FIVSVFASPV VSIISCLGFP KVYSLVAARL  60
   61 VLGCIILSTL RFFRIQIKKK FGNQVETFFV LFTSLQFHFL FYCTRPLPNI LALGLVNLAY 120
  121 GNWLKGNFYP ALSFLIFATV IFRCDTMLLL GPIGLELLLT KSISFWKALK YCVGTALLAV 180
  181 GLTIFVDSIM WKKFVWPEFE VFWFNSILNR SSDWGRLHQI GHPANVAGEE WVHIDTFGAM 240
  241 NGISRFCEDD FPWRYSKEEE IVVEELRNRN FTYLVNEHSS VDGYKCLFYE EGFERLELRR 300
  301 GFPPIVLVKK AKVYLHREMK KEDPFHKKWP GC

Type	Start	End	Confidence
Cytoplasmic	1	25	0.88
Transmembrane Helix	26	47	0.89
Non-Cytoplasmic	48	54	0.73
Transmembrane Helix	55	73	0.96
Cytoplasmic	74	84	0.80
Transmembrane Helix	85	104	0.73
Non-Cytoplasmic	105	127	0.67
Transmembrane Helix	128	151	0.81
Cytoplasmic	152	167	0.73
Transmembrane Helix	168	191	0.85
Non-Cytoplasmic	192	332	0.83